51 lines
1.4 KiB
Ruby
51 lines
1.4 KiB
Ruby
require 'formula'
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class Abyss < Formula
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homepage 'http://www.bcgsc.ca/platform/bioinfo/software/abyss'
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url 'http://www.bcgsc.ca/downloads/abyss/abyss-1.3.2.tar.gz'
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md5 'a7551c95f33a0c61cab50bc35db347e4'
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# Only header files are used from these packages, so :build is appropriate
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depends_on 'boost' => :build
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depends_on 'google-sparsehash' => :build
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# Snow Leopard comes with mpi but Lion does not
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depends_on 'open-mpi' if MacOS.lion?
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# strip breaks the ability to read compressed files.
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skip_clean 'bin'
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# abyss-overlap does not build with LLVM-GCC, so skip it. See:
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# http://lists.apple.com/archives/xcode-users/2011/Oct/msg00241.html
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# https://github.com/mxcl/homebrew/pull/10550
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def patches
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DATA
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end
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def install
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system "./configure", "--disable-dependency-tracking",
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"--prefix=#{prefix}"
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system "make install"
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end
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def test
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system "#{bin}/ABYSS --version"
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end
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end
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__END__
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diff --git a/Map/Makefile.in b/Map/Makefile.in
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index 7a4e5a8..4dd5dd5 100644
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--- a/Map/Makefile.in
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+++ b/Map/Makefile.in
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@@ -32,8 +32,7 @@ POST_INSTALL = :
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NORMAL_UNINSTALL = :
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PRE_UNINSTALL = :
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POST_UNINSTALL = :
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-bin_PROGRAMS = abyss-index$(EXEEXT) abyss-map$(EXEEXT) \
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- abyss-overlap$(EXEEXT)
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+bin_PROGRAMS = abyss-index$(EXEEXT) abyss-map$(EXEEXT)
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subdir = Map
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DIST_COMMON = $(srcdir)/Makefile.am $(srcdir)/Makefile.in
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ACLOCAL_M4 = $(top_srcdir)/aclocal.m4
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