homebrew-core/Formula/abyss.rb

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require 'formula'
class Abyss < Formula
homepage 'http://www.bcgsc.ca/platform/bioinfo/software/abyss'
url 'http://www.bcgsc.ca/downloads/abyss/abyss-1.3.2.tar.gz'
md5 'a7551c95f33a0c61cab50bc35db347e4'
# Only header files are used from these packages, so :build is appropriate
depends_on 'boost' => :build
depends_on 'google-sparsehash' => :build
# Snow Leopard comes with mpi but Lion does not
depends_on 'open-mpi' if MacOS.lion?
# strip breaks the ability to read compressed files.
skip_clean 'bin'
# abyss-overlap does not build with LLVM-GCC, so skip it. See:
# http://lists.apple.com/archives/xcode-users/2011/Oct/msg00241.html
# https://github.com/mxcl/homebrew/pull/10550
def patches
DATA
end
def install
system "./configure", "--disable-dependency-tracking",
"--prefix=#{prefix}"
system "make install"
end
def test
system "#{bin}/ABYSS --version"
end
end
__END__
diff --git a/Map/Makefile.in b/Map/Makefile.in
index 7a4e5a8..4dd5dd5 100644
--- a/Map/Makefile.in
+++ b/Map/Makefile.in
@@ -32,8 +32,7 @@ POST_INSTALL = :
NORMAL_UNINSTALL = :
PRE_UNINSTALL = :
POST_UNINSTALL = :
-bin_PROGRAMS = abyss-index$(EXEEXT) abyss-map$(EXEEXT) \
- abyss-overlap$(EXEEXT)
+bin_PROGRAMS = abyss-index$(EXEEXT) abyss-map$(EXEEXT)
subdir = Map
DIST_COMMON = $(srcdir)/Makefile.am $(srcdir)/Makefile.in
ACLOCAL_M4 = $(top_srcdir)/aclocal.m4