homebrew-core/Formula/vcftools.rb

36 lines
1.2 KiB
Ruby

class Vcftools < Formula
desc "Tools for working with VCF files"
homepage "https://vcftools.github.io/"
url "https://github.com/vcftools/vcftools/releases/download/v0.1.15/vcftools-0.1.15.tar.gz"
sha256 "31e47afd5be679d89ece811a227525925b6907cce4af2c86f10f465e080383e3"
bottle do
cellar :any_skip_relocation
sha256 "8885f5eb915bd7bd7b270b421d23aa3b9b600f53e009ddb02ead70ec1a7d7488" => :high_sierra
sha256 "39f16509c8bd0f394044ea8a9f59e10c7764c1289975f6c0de6b1a4e2bd630ae" => :sierra
sha256 "d93943d5f24309df2165ea3dd507c4b00b75ef166d0b99a55e8244f98eb2bfbc" => :el_capitan
end
depends_on "pkg-config" => :build
depends_on "htslib"
def install
system "./configure", "--disable-dependency-tracking",
"--disable-silent-rules",
"--prefix=#{prefix}",
"--with-pmdir=lib/perl5/site_perl"
system "make", "install"
bin.env_script_all_files(libexec/"bin", :PERL5LIB => lib/"perl5/site_perl")
end
test do
(testpath/"test.vcf").write <<~EOS
##fileformat=VCFv4.0
#CHROM POS ID REF ALT QUAL FILTER INFO
1 1 . A C 10 PASS .
EOS
system "#{bin}/vcf-validator", "test.vcf"
end
end