2017-12-23 04:20:57 +00:00
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class Vcftools < Formula
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desc "Tools for working with VCF files"
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homepage "https://vcftools.github.io/"
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url "https://github.com/vcftools/vcftools/releases/download/v0.1.15/vcftools-0.1.15.tar.gz"
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sha256 "31e47afd5be679d89ece811a227525925b6907cce4af2c86f10f465e080383e3"
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2017-12-24 18:31:43 +00:00
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bottle do
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cellar :any_skip_relocation
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sha256 "8885f5eb915bd7bd7b270b421d23aa3b9b600f53e009ddb02ead70ec1a7d7488" => :high_sierra
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sha256 "39f16509c8bd0f394044ea8a9f59e10c7764c1289975f6c0de6b1a4e2bd630ae" => :sierra
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sha256 "d93943d5f24309df2165ea3dd507c4b00b75ef166d0b99a55e8244f98eb2bfbc" => :el_capitan
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end
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2017-12-23 04:20:57 +00:00
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depends_on "pkg-config" => :build
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depends_on "htslib"
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def install
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system "./configure", "--disable-dependency-tracking",
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"--disable-silent-rules",
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"--prefix=#{prefix}",
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"--with-pmdir=lib/perl5/site_perl"
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system "make", "install"
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bin.env_script_all_files(libexec/"bin", :PERL5LIB => lib/"perl5/site_perl")
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end
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test do
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(testpath/"test.vcf").write <<~EOS
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##fileformat=VCFv4.0
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#CHROM POS ID REF ALT QUAL FILTER INFO
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1 1 . A C 10 PASS .
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EOS
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system "#{bin}/vcf-validator", "test.vcf"
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end
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end
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