homebrew-core/Formula/samtools.rb

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require 'formula'
2011-03-10 05:11:03 +00:00
class Samtools < Formula
url 'http://sourceforge.net/projects/samtools/files/samtools/0.1.18/samtools-0.1.18.tar.bz2'
homepage 'http://samtools.sourceforge.net/'
md5 '71dab132e21c0766f0de84c2371a9157'
head 'https://samtools.svn.sourceforge.net/svnroot/samtools/trunk/samtools'
def install
system "make"
system "make razip"
system "cd bcftools; make"
bin.install %w{samtools razip bcftools/bcftools bcftools/vcfutils.pl}
bin.install %w{misc/maq2sam-long misc/maq2sam-short misc/md5fa misc/md5sum-lite misc/seqtk misc/wgsim}
bin.install Dir['misc/*.pl']
lib.install 'libbam.a'
man1.install %w{samtools.1}
(share+'samtools').install %w{examples}
(include+'bam').install Dir['*.h']
end
end