samtools 0.1.18
Install tools in misc/ to bin. Signed-off-by: Jack Nagel <jacknagel@gmail.com>master
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0a09a0db07
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@ -1,9 +1,9 @@
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require 'formula'
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class Samtools < Formula
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url 'http://sourceforge.net/projects/samtools/files/samtools/0.1.17/samtools-0.1.17.tar.bz2'
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url 'http://sourceforge.net/projects/samtools/files/samtools/0.1.18/samtools-0.1.18.tar.bz2'
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homepage 'http://samtools.sourceforge.net/'
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md5 '9549f7a6bba894766df9c3dd18d61f0b'
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md5 '71dab132e21c0766f0de84c2371a9157'
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head 'https://samtools.svn.sourceforge.net/svnroot/samtools/trunk/samtools'
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def install
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@ -11,11 +11,12 @@ class Samtools < Formula
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system "make razip"
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system "cd bcftools; make"
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bin.install %w{samtools razip bcftools/bcftools}
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(share+'samtools').install %w{examples misc}
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(share+'samtools/misc').install %w{bcftools/vcfutils.pl}
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bin.install %w{samtools razip bcftools/bcftools bcftools/vcfutils.pl}
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bin.install %w{misc/maq2sam-long misc/maq2sam-short misc/md5fa misc/md5sum-lite misc/seqtk misc/wgsim}
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bin.install Dir['misc/*.pl']
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lib.install 'libbam.a'
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(include+'bam').install Dir['*.h']
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man1.install %w{samtools.1}
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(share+'samtools').install %w{examples}
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(include+'bam').install Dir['*.h']
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end
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end
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