39 lines
1.4 KiB
Ruby
39 lines
1.4 KiB
Ruby
class Bioawk < Formula
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desc "AWK modified for biological data"
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homepage "https://github.com/lh3/bioawk"
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url "https://github.com/lh3/bioawk/archive/v1.0.tar.gz"
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sha256 "5cbef3f39b085daba45510ff450afcf943cfdfdd483a546c8a509d3075ff51b5"
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bottle do
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cellar :any_skip_relocation
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sha256 "f0e6d3b143b32066da8f41266d1edf2855ab0d780982c8eb09b78194c1e2484e" => :big_sur
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sha256 "c7377ef6e226404f71d52c04715ea0bb8456e1c90493e93e78101dfb3ed2190e" => :catalina
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sha256 "7082d4073e07ba3dfa849f95eb126d966a45f9fceb1d197595119a216e465727" => :mojave
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sha256 "023f5cafaa31404e68b8fc6bcfbeee27e63eb5fbcab897d2f406fceda90ec9ff" => :high_sierra
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sha256 "154d44dd9ea56db8170127711e991950d487e379ae12df76332e4b7512f79fe8" => :sierra
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sha256 "df0810bc087f924cdddcdb73f00faf9772de9475e0e698c7af8a7d036b3a4c91" => :el_capitan
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end
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uses_from_macos "bison" => :build
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uses_from_macos "zlib"
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def install
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# Fix make: *** No rule to make target `ytab.h', needed by `b.o'.
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ENV.deparallelize
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system "make"
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bin.install "bioawk"
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man1.install "awk.1" => "bioawk.1"
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end
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test do
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(testpath/"test.fasta").write <<~EOS
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>U00096.2:1-70
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AGCTTTTCATTCTGACTGCAACGGGCAATATGTCT
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CTGTGTGGATTAAAAAAAGAGTGTCTGATAGCAGC
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EOS
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cmd = "#{bin}/bioawk -cfastx '{print length($seq)}' test.fasta"
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assert_equal "70", shell_output(cmd).chomp
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end
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end
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