homebrew-core/Formula/r.rb

class R < Formula
  desc "Software environment for statistical computing"
  homepage "https://www.r-project.org/"
  url "https://cran.r-project.org/src/base/R-4/R-4.2.2.tar.gz"
  sha256 "0ff62b42ec51afa5713caee7c4fde7a0c45940ba39bef8c5c9487fef0c953df5"
  license "GPL-2.0-or-later"
  revision 1

  livecheck do
    url "https://cran.rstudio.com/banner.shtml"
    regex(%r{href=(?:["']?|.*?/)R[._-]v?(\d+(?:\.\d+)+)\.t}i)
  end

  bottle do
    sha256 arm64_ventura:  "fc5834a3ae121615ddd4d37b9c9ead1eaa8a49ddb62924db85783e89eaca7523"
    sha256 arm64_monterey: "da8a9d616ad6378683b2c053a1eb21979de6fb87f0b2a167dc817e3621efabd4"
    sha256 arm64_big_sur:  "27dfc85cb338bd47ab2c4d2056084c0c0c2b7b2e7274487da1d33c5b6e02f5b3"
    sha256 ventura:        "10efb9286514143cb2a29ed3722122434a844c70c211b9b6b1ae6aa6ac6efcc4"
    sha256 monterey:       "f7198e01cae195c5b91a8a2105fb1bfd5a76376f97b30c84f4e76fe3dff9c42a"
    sha256 big_sur:        "c30d89edffe0b4e6b56fea24ddf0b594e08b96d372d45767f052363647ba985c"
    sha256 x86_64_linux:   "7662bb5a6d42fdf07da6b41b2a47df8c8f9dc36f6e4438912826041c65c11b65"
  end

  depends_on "pkg-config" => :build
  depends_on "cairo"
  depends_on "gcc" # for gfortran
  depends_on "gettext"
  depends_on "jpeg-turbo"
  depends_on "libpng"
  depends_on "openblas"
  depends_on "pcre2"
  depends_on "readline"
  depends_on "tcl-tk"
  depends_on "xz"

  uses_from_macos "curl"
  uses_from_macos "icu4c"
  uses_from_macos "libffi", since: :catalina

  on_linux do
    depends_on "libice"
    depends_on "libtirpc"
    depends_on "libx11"
    depends_on "libxt"
    depends_on "pango"
  end

  # needed to preserve executable permissions on files without shebangs
  skip_clean "lib/R/bin", "lib/R/doc"

  fails_with :gcc do
    version "11"
    cause "Unknown. FIXME."
  end

  # Patch to fix build on macOS Ventura, remove in next release
  # https://bugs.r-project.org/show_bug.cgi?id=18426
  patch do
    on_ventura :or_newer do
      url "https://raw.githubusercontent.com/Homebrew/formula-patches/d647f4e1d61c8dba5f15edf7a0fc567f681641fb/r/ventura.diff"
      sha256 "0b3c230432ef6a9231eaf48f39fd22155d3e1c7cd4f2a497e96ff4bdc7d91b84"
    end
  end

  def install
    # BLAS detection fails with Xcode 12 due to missing prototype
    # https://bugs.r-project.org/bugzilla/show_bug.cgi?id=18024
    ENV.append "CFLAGS", "-Wno-implicit-function-declaration"

    args = [
      "--prefix=#{prefix}",
      "--enable-memory-profiling",
      "--with-tcl-config=#{Formula["tcl-tk"].opt_lib}/tclConfig.sh",
      "--with-tk-config=#{Formula["tcl-tk"].opt_lib}/tkConfig.sh",
      "--with-blas=-L#{Formula["openblas"].opt_lib} -lopenblas",
      "--enable-R-shlib",
      "--disable-java",
      "--with-cairo",
      # This isn't necessary to build R, but it's saved in Makeconf
      # and helps CRAN packages find gfortran when Homebrew may not be
      # in PATH (e.g. under RStudio, launched from Finder)
      "FC=#{Formula["gcc"].opt_bin}/gfortran",
    ]

    if OS.mac?
      args << "--without-x"
      args << "--with-aqua"
    else
      args << "--libdir=#{lib}" # avoid using lib64 on CentOS

      # Avoid references to homebrew shims
      args << "LD=ld"

      # If LDFLAGS contains any -L options, configure sets LD_LIBRARY_PATH to
      # search those directories. Remove -LHOMEBREW_PREFIX/lib from LDFLAGS.
      ENV.remove "LDFLAGS", "-L#{HOMEBREW_PREFIX}/lib"

      ENV.append "CPPFLAGS", "-I#{Formula["libtirpc"].opt_include}/tirpc"
      ENV.append "LDFLAGS", "-L#{Formula["libtirpc"].opt_lib}"
    end

    # Help CRAN packages find gettext and readline
    ["gettext", "readline", "xz"].each do |f|
      ENV.append "CPPFLAGS", "-I#{Formula[f].opt_include}"
      ENV.append "LDFLAGS", "-L#{Formula[f].opt_lib}"
    end

    system "./configure", *args
    system "make"
    ENV.deparallelize do
      system "make", "install"
    end

    cd "src/nmath/standalone" do
      system "make"
      ENV.deparallelize do
        system "make", "install"
      end
    end

    r_home = lib/"R"

    # make Homebrew packages discoverable for R CMD INSTALL
    inreplace r_home/"etc/Makeconf" do |s|
      s.gsub!(/^CPPFLAGS =.*/, "\\0 -I#{HOMEBREW_PREFIX}/include")
      s.gsub!(/^LDFLAGS =.*/, "\\0 -L#{HOMEBREW_PREFIX}/lib")
      s.gsub!(/.LDFLAGS =.*/, "\\0 $(LDFLAGS)")
    end

    include.install_symlink Dir[r_home/"include/*"]
    lib.install_symlink Dir[r_home/"lib/*"]

    # avoid triggering mandatory rebuilds of r when gcc is upgraded
    check_replace = OS.mac?
    inreplace lib/"R/etc/Makeconf", Formula["gcc"].prefix.realpath,
                                    Formula["gcc"].opt_prefix,
                                    check_replace
  end

  def post_install
    short_version =
      `#{bin}/Rscript -e 'cat(as.character(getRversion()[1,1:2]))'`.strip
    site_library = HOMEBREW_PREFIX/"lib/R/#{short_version}/site-library"
    site_library.mkpath
    ln_s site_library, lib/"R/site-library"
  end

  test do
    assert_equal "[1] 2", shell_output("#{bin}/Rscript -e 'print(1+1)'").chomp
    assert_equal shared_library(""), shell_output("#{bin}/R CMD config DYLIB_EXT").chomp
    system bin/"Rscript", "-e", "if(!capabilities('cairo')) stop('cairo not available')"

    system bin/"Rscript", "-e", "install.packages('gss', '.', 'https://cloud.r-project.org')"
    assert_predicate testpath/"gss/libs/gss.so", :exist?,
                     "Failed to install gss package"

    winsys = "[1] \"aqua\""
    if OS.linux?
      return if ENV["HOMEBREW_GITHUB_ACTIONS"]

      winsys = "[1] \"x11\""
    end
    assert_equal winsys,
                 shell_output("#{bin}/Rscript -e 'library(tcltk)' -e 'tclvalue(.Tcl(\"tk windowingsystem\"))'").chomp
  end
end