75 lines
2.0 KiB
Ruby
75 lines
2.0 KiB
Ruby
class Cromwell < Formula
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desc "Workflow Execution Engine using Workflow Description Language"
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homepage "https://github.com/broadinstitute/cromwell"
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url "https://github.com/broadinstitute/cromwell/releases/download/76/cromwell-76.jar"
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sha256 "0c9fea35ddb8d6a4a5751d08de90da87c8a9fc6128d3861843555bdfcf4a7e84"
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license "BSD-3-Clause"
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bottle do
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sha256 cellar: :any_skip_relocation, all: "eed65ed4cb8ea82ac26c560cf20e5cc5786b4e757eb58745d991629f60d18dec"
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end
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head do
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url "https://github.com/broadinstitute/cromwell.git"
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depends_on "sbt" => :build
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end
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depends_on "openjdk"
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resource "womtool" do
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url "https://github.com/broadinstitute/cromwell/releases/download/76/womtool-76.jar"
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sha256 "c633ee4ae53d899d196b84a1cea9a013841d3c8ad0ee28b2a831c185bd585988"
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end
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def install
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if build.head?
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system "sbt", "assembly"
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libexec.install Dir["server/target/scala-*/cromwell-*.jar"][0] => "cromwell.jar"
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libexec.install Dir["womtool/target/scala-*/womtool-*.jar"][0] => "womtool.jar"
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else
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libexec.install "cromwell-#{version}.jar" => "cromwell.jar"
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resource("womtool").stage do
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libexec.install "womtool-#{version}.jar" => "womtool.jar"
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end
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end
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(bin/"cromwell").write <<~EOS
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#!/bin/bash
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exec "#{Formula["openjdk"].opt_bin}/java" $JAVA_OPTS -jar "#{libexec}/cromwell.jar" "$@"
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EOS
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(bin/"womtool").write <<~EOS
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#!/bin/bash
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exec "#{Formula["openjdk"].opt_bin}/java" -jar "#{libexec}/womtool.jar" "$@"
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EOS
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end
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test do
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(testpath/"hello.wdl").write <<~EOS
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task hello {
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String name
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command {
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echo 'hello ${name}!'
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}
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output {
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File response = stdout()
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}
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}
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workflow test {
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call hello
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}
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EOS
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(testpath/"hello.json").write <<~EOS
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{
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"test.hello.name": "world"
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}
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EOS
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result = shell_output("#{bin}/cromwell run --inputs hello.json hello.wdl")
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assert_match "test.hello.response", result
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end
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end
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