58 lines
1.5 KiB
Ruby
58 lines
1.5 KiB
Ruby
require 'formula'
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class Vcftools < Formula
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url 'http://downloads.sourceforge.net/project/vcftools/vcftools_0.1.7.tar.gz'
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homepage 'http://vcftools.sourceforge.net/index.html'
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md5 'd3e68027a7fe40d3f8cb28c3006c7248'
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def patches
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# Install Perl modules to /lib/perl5/site_perl and ensure VcfStats.pm is installed
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# This is fixed in vcf source tree, will not be needed after version 0.1.7
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DATA
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end
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def install
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system "make install PREFIX=#{prefix} CPP=#{ENV.cxx}"
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end
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def test
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system "vcftools"
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end
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def caveats; <<-EOS.undent
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To use the Perl modules, make sure Vcf.pm, VcfStats.pm, and FaSlice.pm
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are included in your PERL5LIB environment variable:
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export PERL5LIB=#{HOMEBREW_PREFIX}/lib/perl5/site_perl:${PERL5LIB}
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EOS
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end
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end
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__END__
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diff --git a/Makefile b/Makefile
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index 39c042b..055afd0 100644
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--- a/Makefile
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+++ b/Makefile
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@@ -17,7 +17,7 @@ ifndef PREFIX
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export PREFIX = $(dir $(realpath $(lastword $(MAKEFILE_LIST))))
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endif
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export BINDIR = ${PREFIX}/bin
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-export MODDIR = ${PREFIX}/lib
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+export MODDIR = ${PREFIX}/lib/perl5/site_perl
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DIRS = cpp perl
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install:
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diff --git a/perl/Makefile b/perl/Makefile
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index 222b75d..2e8b49f 100644
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--- a/perl/Makefile
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+++ b/perl/Makefile
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@@ -1,7 +1,7 @@
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BIN = vcf-compare fill-aa vcf-annotate vcf-merge vcf-isec vcf-stats vcf-to-tab fill-an-ac \
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vcf-query vcf-convert vcf-subset vcf-validator vcf-concat vcf-sort
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-MOD = FaSlice.pm Vcf.pm
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+MOD = FaSlice.pm Vcf.pm VcfStats.pm
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install:
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@for i in $(BIN); do cp $(CURDIR)/$$i $(BINDIR)/$$i; done; \
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