28 lines
916 B
Ruby
28 lines
916 B
Ruby
class Fastqc < Formula
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desc "Quality control tool for high throughput sequence data"
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homepage "https://www.bioinformatics.babraham.ac.uk/projects/fastqc/"
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url "https://www.bioinformatics.babraham.ac.uk/projects/fastqc/fastqc_v0.11.9.zip"
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sha256 "15510a176ef798e40325b717cac556509fb218268cfdb9a35ea6776498321369"
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revision 1
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bottle :unneeded
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depends_on "openjdk"
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def install
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libexec.install Dir["*"]
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chmod 0755, libexec/"fastqc"
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(bin/"fastqc").write_env_script libexec/"fastqc", :JAVA_HOME => Formula["openjdk"].opt_prefix
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end
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test do
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(testpath/"test.fasta").write <<~EOS
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@SRR098281.1 HWUSI-EAS1599_1:2:1:0:318 length=35
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CNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
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+SRR098281.1 HWUSI-EAS1599_1:2:1:0:318 length=35
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#!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!
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EOS
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assert_match "Analysis complete for test.fasta", shell_output("#{bin}/fastqc test.fasta")
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end
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end
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