homebrew-core/Formula/fastqc.rb

28 lines
916 B
Ruby

class Fastqc < Formula
desc "Quality control tool for high throughput sequence data"
homepage "https://www.bioinformatics.babraham.ac.uk/projects/fastqc/"
url "https://www.bioinformatics.babraham.ac.uk/projects/fastqc/fastqc_v0.11.9.zip"
sha256 "15510a176ef798e40325b717cac556509fb218268cfdb9a35ea6776498321369"
revision 1
bottle :unneeded
depends_on "openjdk"
def install
libexec.install Dir["*"]
chmod 0755, libexec/"fastqc"
(bin/"fastqc").write_env_script libexec/"fastqc", :JAVA_HOME => Formula["openjdk"].opt_prefix
end
test do
(testpath/"test.fasta").write <<~EOS
@SRR098281.1 HWUSI-EAS1599_1:2:1:0:318 length=35
CNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
+SRR098281.1 HWUSI-EAS1599_1:2:1:0:318 length=35
#!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!
EOS
assert_match "Analysis complete for test.fasta", shell_output("#{bin}/fastqc test.fasta")
end
end