44 lines
2.2 KiB
Ruby
44 lines
2.2 KiB
Ruby
class Bioawk < Formula
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desc "AWK modified for biological data"
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homepage "https://github.com/lh3/bioawk"
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url "https://github.com/lh3/bioawk/archive/v1.0.tar.gz"
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sha256 "5cbef3f39b085daba45510ff450afcf943cfdfdd483a546c8a509d3075ff51b5"
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bottle do
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sha256 cellar: :any_skip_relocation, arm64_ventura: "a80d9d6887393ec604646dd2e79090bda1034f5947488995c383d29b8fbb2f47"
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sha256 cellar: :any_skip_relocation, arm64_monterey: "a568547e0fb85d1d0678d157c93aee71710f58d3bc4591186365ae28e4502b24"
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sha256 cellar: :any_skip_relocation, arm64_big_sur: "de4d41adcf20cf87de3d2310d98c1dbfbff95eb3432e6d0888be964889f024c6"
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sha256 cellar: :any_skip_relocation, ventura: "d10e6430821b1876cf8ad863dce1978f7aa4564bc3508e48f7cfa9d8e4d89306"
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sha256 cellar: :any_skip_relocation, monterey: "844d8041e128ebcf46d1a5dec20dfc22f0a3fc1ff48388310cf810685acd9890"
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sha256 cellar: :any_skip_relocation, big_sur: "f0e6d3b143b32066da8f41266d1edf2855ab0d780982c8eb09b78194c1e2484e"
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sha256 cellar: :any_skip_relocation, catalina: "c7377ef6e226404f71d52c04715ea0bb8456e1c90493e93e78101dfb3ed2190e"
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sha256 cellar: :any_skip_relocation, mojave: "7082d4073e07ba3dfa849f95eb126d966a45f9fceb1d197595119a216e465727"
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sha256 cellar: :any_skip_relocation, high_sierra: "023f5cafaa31404e68b8fc6bcfbeee27e63eb5fbcab897d2f406fceda90ec9ff"
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sha256 cellar: :any_skip_relocation, sierra: "154d44dd9ea56db8170127711e991950d487e379ae12df76332e4b7512f79fe8"
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sha256 cellar: :any_skip_relocation, el_capitan: "df0810bc087f924cdddcdb73f00faf9772de9475e0e698c7af8a7d036b3a4c91"
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sha256 cellar: :any_skip_relocation, x86_64_linux: "1d611e2578e57304e571f02a58ec46efc83752a97a7d830b40e03a2c83749bb3"
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end
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uses_from_macos "bison" => :build
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uses_from_macos "zlib"
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def install
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# Fix make: *** No rule to make target `ytab.h', needed by `b.o'.
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ENV.deparallelize
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system "make"
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bin.install "bioawk"
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man1.install "awk.1" => "bioawk.1"
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end
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test do
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(testpath/"test.fasta").write <<~EOS
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>U00096.2:1-70
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AGCTTTTCATTCTGACTGCAACGGGCAATATGTCT
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CTGTGTGGATTAAAAAAAGAGTGTCTGATAGCAGC
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EOS
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cmd = "#{bin}/bioawk -cfastx '{print length($seq)}' test.fasta"
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assert_equal "70", shell_output(cmd).chomp
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end
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end
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