39 lines
1.7 KiB
Ruby
39 lines
1.7 KiB
Ruby
class Kalign < Formula
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desc "Fast multiple sequence alignment program for biological sequences"
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homepage "https://github.com/TimoLassmann/kalign"
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url "https://github.com/TimoLassmann/kalign/archive/v3.3.4.tar.gz"
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sha256 "f22fa45cbc5c81586d515ee6a77fdbb3704139dc8fdef83cc5f1596aafb59c7f"
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license "GPL-3.0-or-later"
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bottle do
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sha256 cellar: :any, arm64_ventura: "a6b7cf192e20ecfe822900fc1cdb71e9bf559ef4c2808b6b1f7b0e2329ce3669"
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sha256 cellar: :any, arm64_monterey: "0183c78ad8d561035739573433b4b139c8695c85caed1af9430a1ec8731e9a32"
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sha256 cellar: :any, arm64_big_sur: "8166c12b058ab9463b2b86c582493d719515fbd6b732a0f713c7f55fc6fd1c1b"
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sha256 cellar: :any, ventura: "cab1cd3183cdeb5b0462643d8325b4641ebce6c3950479ac38cf9e48ab2acb58"
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sha256 cellar: :any, monterey: "fe3dc31a53bfae01ee41106653f41428db61a797822ff108ce5b4379cc9709a2"
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sha256 cellar: :any, big_sur: "7616559bef1a121f72152cfefc55a6e96e54bf435df093d6653d082ed7d474ac"
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sha256 cellar: :any, catalina: "3f5c667d8ef7cc9d042691c85756d049edc531807f371c80b6bb3fed89db853a"
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sha256 cellar: :any_skip_relocation, x86_64_linux: "3feb15659276f132a080cd0e7b638bcb1d9f6943e08c9b087d6d91195c8538ef"
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end
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depends_on "cmake" => :build
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def install
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args = std_cmake_args + %w[
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-DENABLE_AVX=OFF
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-DENABLE_AVX2=OFF
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]
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system "cmake", "-S", ".", "-B", "build", *args
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system "cmake", "--build", "build"
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system "cmake", "--install", "build"
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end
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test do
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input = ">1\nA\n>2\nA"
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(testpath/"test.fa").write(input)
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output = shell_output("#{bin}/kalign test.fa")
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assert_match input, output
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end
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end
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