38 lines
1.7 KiB
Ruby
38 lines
1.7 KiB
Ruby
class Vsearch < Formula
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desc "Versatile open-source tool for microbiome analysis"
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homepage "https://github.com/torognes/vsearch"
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url "https://github.com/torognes/vsearch/archive/v2.19.0.tar.gz"
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sha256 "74bc30786512d07e49836320af1e745ef527c4472317621d3bd0b50cbc218736"
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license any_of: ["BSD-2-Clause", "GPL-3.0-or-later"]
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bottle do
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sha256 cellar: :any_skip_relocation, arm64_monterey: "d650a1688c51b8342f3c1377c0bbf15e70ea8671ea1894952c6f0f4955bd37b2"
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sha256 cellar: :any_skip_relocation, arm64_big_sur: "2e868227ea7310388d437a7512d89b4b3e01a466f168e01f924fb48640f5a97e"
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sha256 cellar: :any_skip_relocation, monterey: "ed29dc48730e5eff451d0ff077d0e81a80cbd4a238922ba8e0b2b1cedc23dbc4"
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sha256 cellar: :any_skip_relocation, big_sur: "7563a8abc26edd69dbbb1704aa702385c5925cd72e3c3177eb73ec49bab1201f"
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sha256 cellar: :any_skip_relocation, catalina: "f68a81a840b6684d83e6497b87103278a037c859dfc12f06035f73b606dec778"
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sha256 cellar: :any_skip_relocation, x86_64_linux: "1a992ff5bd5edb9c83ad9d2fd969062ecdceb9ded4db23c912e11cd6ccc58789"
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end
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depends_on "autoconf" => :build
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depends_on "automake" => :build
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def install
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system "./autogen.sh"
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system "./configure", "--disable-dependency-tracking",
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"--disable-silent-rules",
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"--prefix=#{prefix}"
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system "make"
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system "make", "install"
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end
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test do
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(testpath/"test.fasta").write <<~EOS
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>U00096.2:1-70
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AGCTTTTCATTCTGACTGCAACGGGCAATATGTCTCTGTGTGGATTAAAAAAAGAGTGTCTGATAGCAGC
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EOS
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system bin/"vsearch", "--rereplicate", "test.fasta", "--output", "output.txt"
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assert_predicate testpath/"output.txt", :exist?
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end
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end
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