29 lines
1001 B
Ruby
29 lines
1001 B
Ruby
class Bowtie2 < Formula
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desc "Fast and sensitive gapped read aligner"
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homepage "https://bowtie-bio.sourceforge.io/bowtie2/"
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url "https://github.com/BenLangmead/bowtie2/archive/v2.4.1.tar.gz"
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sha256 "9fb25513886bf294217dd9c5ca26d18dd5e02e0ae999935ac7ba5700befc492e"
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license "GPL-3.0"
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bottle do
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cellar :any
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sha256 "fd107ab602165eac36dc748124cc6688f8eccf63ff9a64ebcf82fa4db45b5788" => :catalina
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sha256 "ca70730942c77835fc3ee267dd6c284d51351af0f59db282876ca9ada2ce4672" => :mojave
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sha256 "61597b46c1e6bd55d74c89e107342c4bdb5014d3a7ea37628d544b6f429bef9c" => :high_sierra
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end
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depends_on "tbb"
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def install
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system "make", "install", "PREFIX=#{prefix}"
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pkgshare.install "example", "scripts"
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end
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test do
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system "#{bin}/bowtie2-build",
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"#{pkgshare}/example/reference/lambda_virus.fa", "lambda_virus"
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assert_predicate testpath/"lambda_virus.1.bt2", :exist?,
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"Failed to create viral alignment lambda_virus.1.bt2"
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end
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end
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