91 lines
3.4 KiB
Ruby
91 lines
3.4 KiB
Ruby
class RaxmlNg < Formula
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desc "RAxML Next Generation: faster, easier-to-use and more flexible"
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homepage "https://sco.h-its.org/exelixis/web/software/raxml/"
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url "https://github.com/amkozlov/raxml-ng.git",
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tag: "1.1.0",
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revision: "9b8150852c21fd0caa764752797e17382fc03aa0"
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license "AGPL-3.0-or-later"
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bottle do
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rebuild 1
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sha256 cellar: :any, arm64_ventura: "6e3db16bc310a565d8af3c0ca2b9775bf760f9e07f89ef776ef198b6ab6404a5"
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sha256 cellar: :any, arm64_monterey: "2229ebeb6fa282a4e3f97896ef02ba2d32671d497bc65188dc118d13239693d8"
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sha256 cellar: :any, arm64_big_sur: "0236a1f00a663905ad3f3a8eb0cff275900f7f0b29a4ff65616b82384bb01467"
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sha256 cellar: :any, ventura: "d4b7f0b7df9d8c4179a237e9317561e7a6e3904d62a16231be25d6eff815440c"
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sha256 cellar: :any, monterey: "ffce4563023dbcd2e0eea0f6c06a0f33157561f412557cab49ed4c412c32562e"
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sha256 cellar: :any, big_sur: "c6cb8ca0d17b1d5a2c074e236c63d0fcd848db96d026393566e1c4fec4d82f9d"
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sha256 cellar: :any, catalina: "e62985fdf3fc153cb53c87a4ab230b4e33b9b55a0c990cabd774c27a1ab7d6d9"
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sha256 cellar: :any_skip_relocation, x86_64_linux: "e1b99fec129377549ae701ce7eae61eb0289fe34f9e33d11c452c5bf0b1b584d"
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end
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depends_on "cmake" => :build
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depends_on "gmp"
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uses_from_macos "bison" => :build
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uses_from_macos "flex" => :build
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on_linux do
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depends_on "open-mpi"
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end
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# Backport ARM support. Remove in the next release.
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# Ref: https://github.com/amkozlov/raxml-ng/commit/6a8f3d98ba0243b9f1452e0f7aab928e45d59b6f
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on_arm do
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patch :DATA
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patch do
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url "https://github.com/xflouris/libpll-2/commit/201983d128aa34e658d145e99ad775f441b42197.patch?full_index=1"
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sha256 "6f14c55450567672aa7c2b82dcce19c6e00395f7f9b8ed7529a18b3030e70e16"
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directory "libs/pll-modules/libs/libpll"
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end
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end
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resource "homebrew-example" do
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url "https://sco.h-its.org/exelixis/resource/download/hands-on/dna.phy"
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sha256 "c2adc42823313831b97af76b3b1503b84573f10d9d0d563be5815cde0effe0c2"
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end
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def install
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args = std_cmake_args + ["-DUSE_GMP=ON"]
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system "cmake", "-S", ".", "-B", "build", *args
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system "cmake", "--build", "build"
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system "cmake", "--install", "build"
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# Upstream doesn't support building MPI variant on macOS.
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# The build ignores USE_MPI=ON and forces ENABLE_MPI=OFF.
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# This causes necessary flags like -D_RAXML_MPI to not get set.
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return if OS.mac?
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system "cmake", "-S", ".", "-B", "build_mpi", *args, "-DUSE_MPI=ON"
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system "cmake", "--build", "build_mpi"
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system "cmake", "--install", "build_mpi"
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end
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test do
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testpath.install resource("homebrew-example")
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system bin/"raxml-ng", "--msa", "dna.phy", "--start", "--model", "GTR"
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end
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end
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__END__
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diff --git a/src/util/sysutil.cpp b/src/util/sysutil.cpp
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index 8d6501f..cdc4c72 100644
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--- a/src/util/sysutil.cpp
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+++ b/src/util/sysutil.cpp
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@@ -1,4 +1,4 @@
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-#ifndef _WIN32
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+#if (!defined(_WIN32) && !defined(__aarch64__))
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#include <cpuid.h>
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#endif
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#include <sys/time.h>
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@@ -170,7 +170,9 @@ unsigned long sysutil_get_memtotal(bool ignore_errors)
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static void get_cpuid(int32_t out[4], int32_t x)
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{
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-#ifdef _WIN32
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+#ifdef __aarch64__
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+// not supported
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+#elif defined(_WIN32)
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__cpuid(out, x);
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#else
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__cpuid_count(x, 0, out[0], out[1], out[2], out[3]);
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