52 lines
2.6 KiB
Ruby
52 lines
2.6 KiB
Ruby
class Prodigal < Formula
|
|
desc "Microbial gene prediction"
|
|
homepage "https://github.com/hyattpd/Prodigal"
|
|
url "https://github.com/hyattpd/Prodigal/archive/v2.6.3.tar.gz"
|
|
sha256 "89094ad4bff5a8a8732d899f31cec350f5a4c27bcbdd12663f87c9d1f0ec599f"
|
|
license "GPL-3.0-or-later"
|
|
|
|
livecheck do
|
|
url :stable
|
|
strategy :github_latest
|
|
end
|
|
|
|
bottle do
|
|
sha256 cellar: :any_skip_relocation, arm64_ventura: "a790b0ef414bf71bd6382b1e7e2acee149988003a3def80085c4ae555e436ed0"
|
|
sha256 cellar: :any_skip_relocation, arm64_monterey: "bcf9c5deb46b542d95f4bcca4f4f947d60fee5138b76eab5018b61eb6f86279d"
|
|
sha256 cellar: :any_skip_relocation, arm64_big_sur: "abcf0f632ae6187b7b29e2ebd9680717c3678d3e2694b87840591a0f51d4db09"
|
|
sha256 cellar: :any_skip_relocation, ventura: "8b27c484b78ade21719983f96701441033f3c8bc409f12db3678a4da740b108e"
|
|
sha256 cellar: :any_skip_relocation, monterey: "19a6b172b25f41612c11427cb12b19cca27580935c756ac5337c9bce27e3b4a5"
|
|
sha256 cellar: :any_skip_relocation, big_sur: "5f61811f05bc3e784428dd1ece760e6375f2624b103393e1809ece54659d440c"
|
|
sha256 cellar: :any_skip_relocation, catalina: "5cebc25d98ba4439aa810c4e05c9f30e7ecf768035d135d0989cf58c18517a87"
|
|
sha256 cellar: :any_skip_relocation, mojave: "8751eedad40b08714b52a78b9cf48e4101ffa4b871a0ab943830a59137a67e53"
|
|
sha256 cellar: :any_skip_relocation, high_sierra: "c120fed8e29bb3b1a4ff69d5ca05e051a0fe3822784b3d585e142da3452d1ac1"
|
|
sha256 cellar: :any_skip_relocation, sierra: "a27fe5316181d4826e5aa5291d0fc1b1a7087c32c7b4e6aedabf1209d5a8ac36"
|
|
sha256 cellar: :any_skip_relocation, el_capitan: "70b432e3d3da1f4089680b06c0745b7dac3611f05d8ec9440faa918bc82d6fe5"
|
|
sha256 cellar: :any_skip_relocation, x86_64_linux: "9974eaeb5029133abe08d54412f419ea1159eda1dba47a6c89ee661e865285b2"
|
|
end
|
|
|
|
# Prodigal will have incorrect output if compiled with certain compilers.
|
|
# This will be fixed in the next release. Also see:
|
|
# https://github.com/hyattpd/Prodigal/issues/34
|
|
# https://github.com/hyattpd/Prodigal/issues/41
|
|
# https://github.com/hyattpd/Prodigal/pull/35
|
|
patch do
|
|
on_linux do
|
|
url "https://github.com/hyattpd/Prodigal/commit/cbbb5db21d120f100724b69d5212cf1275ab3759.patch?full_index=1"
|
|
sha256 "fd292c0a98412a7f2ed06d86e0e3f96a9ad698f6772990321ad56985323b99a6"
|
|
end
|
|
end
|
|
|
|
def install
|
|
system "make", "install", "INSTALLDIR=#{bin}"
|
|
end
|
|
|
|
test do
|
|
fasta = <<~EOS
|
|
>U00096.2:1-70
|
|
AGCTTTTCATTCTGACTGCAACGGGCAATATGTCTCTGTGTGGATTAAAAAAAGAGTGTCTGATAGCAGC
|
|
EOS
|
|
assert_match "CDS", pipe_output("#{bin}/prodigal -q -p meta", fasta, 0)
|
|
end
|
|
end
|