39 lines
1.8 KiB
Ruby
39 lines
1.8 KiB
Ruby
class Bowtie2 < Formula
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desc "Fast and sensitive gapped read aligner"
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homepage "https://bowtie-bio.sourceforge.io/bowtie2/"
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url "https://github.com/BenLangmead/bowtie2/archive/v2.5.0.tar.gz"
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sha256 "55dedeba8bea240d3ce3f46211d6e14310035c1de5a3e9ac33f72f739165fea0"
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license "GPL-3.0-or-later"
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bottle do
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sha256 cellar: :any_skip_relocation, arm64_ventura: "2105ca0b03e8362c3f700da25f436e7aaa3a296dc6f09a511e18bd004c0bef01"
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sha256 cellar: :any_skip_relocation, arm64_monterey: "f4682917b22c7bc0f3ce2ef3baad4f1d95c510cf5c7639177ee07612c5783e75"
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sha256 cellar: :any_skip_relocation, arm64_big_sur: "91bce9d10f339a8c83595112691b2b6205fc6d4e61e63d46f2f8f7c32d8380a0"
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sha256 cellar: :any_skip_relocation, ventura: "4558f49d23397aac8d27c0a2c14529b57af08f894e89474ff914dc067addb2ee"
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sha256 cellar: :any_skip_relocation, monterey: "a2067f6944a3e80808476582ba2dcd3da72d791bb8c9371d4c8dadf47749d34c"
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sha256 cellar: :any_skip_relocation, big_sur: "8086d31b98a4fee884fc459cb01f33c98e57fedbb9651273068e3709e54736b0"
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sha256 cellar: :any_skip_relocation, catalina: "5bd8be0504e7806243d33210f54de2c791521af72aa35897b33e14ec1aa734b4"
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sha256 cellar: :any_skip_relocation, x86_64_linux: "d83bdfb506a8e464f6adec0342f12a3da423a01942314a853e962230595610c7"
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end
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uses_from_macos "perl"
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uses_from_macos "python", since: :catalina
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uses_from_macos "zlib"
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on_arm do
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depends_on "simde" => :build
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end
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def install
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system "make", "install", "PREFIX=#{prefix}"
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pkgshare.install "example", "scripts"
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end
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test do
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system "#{bin}/bowtie2-build",
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"#{pkgshare}/example/reference/lambda_virus.fa", "lambda_virus"
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assert_predicate testpath/"lambda_virus.1.bt2", :exist?,
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"Failed to create viral alignment lambda_virus.1.bt2"
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end
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end
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