80 lines
2.9 KiB
Ruby
80 lines
2.9 KiB
Ruby
class Mmseqs2 < Formula
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desc "Software suite for very fast sequence search and clustering"
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homepage "https://mmseqs.com/"
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url "https://github.com/soedinglab/MMseqs2/archive/13-45111.tar.gz"
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version "13-45111"
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sha256 "6444bb682ebf5ced54b2eda7a301fa3e933c2a28b7661f96ef5bdab1d53695a2"
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license "GPL-3.0-or-later"
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head "https://github.com/soedinglab/MMseqs2.git", branch: "master"
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bottle do
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sha256 cellar: :any_skip_relocation, arm64_monterey: "4cc52d9e04445aad8bb4ff8ad6e5ee2555b5d507143bbb88d20f920fb40240f9"
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sha256 cellar: :any_skip_relocation, arm64_big_sur: "510d513310f2372e90eb1cd63a3e03e8f86e92d286fc9bc28e11c64c6e953ebb"
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sha256 cellar: :any_skip_relocation, monterey: "ac8946e457d058c5ee45f2663b0671e16ea000f51465e963291114af9e0637e0"
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sha256 cellar: :any_skip_relocation, big_sur: "9c77c3321deb69aa84df7326821c803ecd377dc3f91931c26ca030832c25ee80"
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sha256 cellar: :any_skip_relocation, catalina: "f52feb3e6c03379981c6d7af2f2a3d404b0f0eb20ef2de490c1e8d67bd03ef54"
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sha256 cellar: :any_skip_relocation, mojave: "72a26a3d303d4150154c8200893ae6f4554b5eb1fe93a24d86c3b88d90aa1a3a"
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sha256 cellar: :any_skip_relocation, x86_64_linux: "c007b75f505bb8b2672da63d4c2d373f1e6162e924172ac52e2f57290548a572"
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end
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depends_on "cmake" => [:build, :test]
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depends_on "wget"
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uses_from_macos "bzip2"
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uses_from_macos "zlib"
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on_macos do
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depends_on "libomp"
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end
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on_linux do
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depends_on "gawk"
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end
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resource "documentation" do
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url "https://github.com/soedinglab/MMseqs2.wiki.git",
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revision: "790eb1b49f460d6054d5b8a6a643b8543f166388"
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end
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resource "testdata" do
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url "https://github.com/soedinglab/MMseqs2/releases/download/12-113e3/MMseqs2-Regression-Minimal.zip"
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sha256 "ab0c2953d1c27736c22a57a1ccbb976c1320435fad82b5c579dbd716b7bae4ce"
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end
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def install
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args = *std_cmake_args << "-DHAVE_TESTS=0" << "-DHAVE_MPI=0"
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args << "-DVERSION_OVERRIDE=#{version}"
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args << if Hardware::CPU.arm?
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"-DHAVE_ARM8=1"
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else
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"-DHAVE_SSE4_1=1"
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end
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if OS.mac?
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libomp = Formula["libomp"]
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args << "-DOpenMP_C_FLAGS=-Xpreprocessor\ -fopenmp\ -I#{libomp.opt_include}"
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args << "-DOpenMP_C_LIB_NAMES=omp"
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args << "-DOpenMP_CXX_FLAGS=-Xpreprocessor\ -fopenmp\ -I#{libomp.opt_include}"
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args << "-DOpenMP_CXX_LIB_NAMES=omp"
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args << "-DOpenMP_omp_LIBRARY=#{libomp.opt_lib}/libomp.a"
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end
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system "cmake", ".", *args
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system "make", "install"
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resource("documentation").stage { doc.install Dir["*"] }
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pkgshare.install "examples"
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bash_completion.install "util/bash-completion.sh" => "mmseqs.sh"
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end
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def caveats
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"MMseqs2 requires at least SSE4.1 CPU instruction support." if !Hardware::CPU.sse4? && !Hardware::CPU.arm?
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end
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test do
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resource("testdata").stage do
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system "./run_regression.sh", "#{bin}/mmseqs", "scratch"
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end
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end
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end
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