homebrew-core/Formula/spades.rb

52 lines
1.7 KiB
Ruby

class Spades < Formula
include Language::Python::Shebang
desc "De novo genome sequence assembly"
homepage "https://cab.spbu.ru/software/spades/"
url "https://cab.spbu.ru/files/release3.15.3/SPAdes-3.15.3.tar.gz"
mirror "https://github.com/ablab/spades/releases/download/v3.15.3/SPAdes-3.15.3.tar.gz"
sha256 "b2e5a9fd7a65aee5ab886222d6af4f7b7bc7f755da7a03941571fabd6b9e1499"
license "GPL-2.0-only"
livecheck do
url "https://cab.spbu.ru/files/?C=M&O=D"
regex(%r{href=.*?release(\d+(?:\.\d+)+)/?["' >]}i)
end
bottle do
sha256 cellar: :any_skip_relocation, monterey: "4488276aba5695c211bce6ded3078c83a14cfe376bf11fd870a2d423cd53d55d"
sha256 cellar: :any_skip_relocation, big_sur: "1709900ba50cdaec70d864c3b7f6c68eaa4e7396055abc6fe540e3529296d84b"
sha256 cellar: :any_skip_relocation, catalina: "07c4724e3a1236f19f6c9a7899077035c17501f1581838428849fc9ec8d25d78"
sha256 cellar: :any_skip_relocation, mojave: "6efc26bfefb204c0ed9370b2d46a2ec0e12c999b6f150d3e2a22c2d38e15d93d"
sha256 cellar: :any_skip_relocation, x86_64_linux: "aa82716b39775ce1f1a5961aad0322514723e92138f9f525db36bc389d47f694"
end
depends_on "cmake" => :build
depends_on "python@3.9"
uses_from_macos "bzip2"
uses_from_macos "ncurses"
uses_from_macos "zlib"
on_macos do
depends_on "libomp"
end
on_linux do
depends_on "jemalloc"
depends_on "readline"
end
def install
mkdir "src/build" do
system "cmake", "..", *std_cmake_args
system "make", "install"
end
rewrite_shebang detected_python_shebang, *bin.children
end
test do
assert_match "TEST PASSED CORRECTLY", shell_output("#{bin}/spades.py --test")
end
end