73 lines
1.9 KiB
Ruby
73 lines
1.9 KiB
Ruby
class Cromwell < Formula
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desc "Workflow Execution Engine using Workflow Description Language"
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homepage "https://github.com/broadinstitute/cromwell"
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url "https://github.com/broadinstitute/cromwell/releases/download/52//cromwell-52.jar"
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sha256 "4b3195420d59d7ea129c3d690c9a1cc323403d9c85965ed7c2a37144af13ffa1"
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license "BSD-3-Clause"
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head do
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url "https://github.com/broadinstitute/cromwell.git"
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depends_on "sbt" => :build
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end
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bottle :unneeded
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depends_on "openjdk"
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resource "womtool" do
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url "https://github.com/broadinstitute/cromwell/releases/download/52//womtool-52.jar"
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sha256 "67331af5a4850c5c04e521682c6618c93c475c041f254121849ddb4cffde5c16"
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end
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def install
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if build.head?
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system "sbt", "assembly"
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libexec.install Dir["server/target/scala-*/cromwell-*.jar"][0] => "cromwell.jar"
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libexec.install Dir["womtool/target/scala-*/womtool-*.jar"][0] => "womtool.jar"
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else
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libexec.install "cromwell-#{version}.jar" => "cromwell.jar"
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resource("womtool").stage do
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libexec.install "womtool-#{version}.jar" => "womtool.jar"
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end
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end
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(bin/"cromwell").write <<~EOS
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#!/bin/bash
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exec "#{Formula["openjdk"].opt_bin}/java" $JAVA_OPTS -jar "#{libexec}/cromwell.jar" "$@"
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EOS
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(bin/"womtool").write <<~EOS
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#!/bin/bash
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exec "#{Formula["openjdk"].opt_bin}/java" -jar "#{libexec}/womtool.jar" "$@"
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EOS
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end
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test do
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(testpath/"hello.wdl").write <<~EOS
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task hello {
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String name
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command {
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echo 'hello ${name}!'
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}
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output {
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File response = stdout()
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}
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}
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workflow test {
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call hello
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}
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EOS
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(testpath/"hello.json").write <<~EOS
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{
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"test.hello.name": "world"
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}
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EOS
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result = shell_output("#{bin}/cromwell run --inputs hello.json hello.wdl")
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assert_match "test.hello.response", result
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end
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end
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