75 lines
2.0 KiB
Ruby
75 lines
2.0 KiB
Ruby
class Cromwell < Formula
|
|
desc "Workflow Execution Engine using Workflow Description Language"
|
|
homepage "https://github.com/broadinstitute/cromwell"
|
|
url "https://github.com/broadinstitute/cromwell/releases/download/75/cromwell-75.jar"
|
|
sha256 "9c66e068a69a922678032a89e27ce4401493957018fa2aa4d82d5e1af3abf5c8"
|
|
license "BSD-3-Clause"
|
|
|
|
bottle do
|
|
sha256 cellar: :any_skip_relocation, all: "f4b0cb7c8eb23448aab766bd492f230612d9cde2108f7bb806892656425b0a8b"
|
|
end
|
|
|
|
head do
|
|
url "https://github.com/broadinstitute/cromwell.git"
|
|
depends_on "sbt" => :build
|
|
end
|
|
|
|
depends_on "openjdk"
|
|
|
|
resource "womtool" do
|
|
url "https://github.com/broadinstitute/cromwell/releases/download/75/womtool-75.jar"
|
|
sha256 "16b64d1c1566dfe53006e2bccce3a9fcb3f98312195172d8d00e84382812ec13"
|
|
end
|
|
|
|
def install
|
|
if build.head?
|
|
system "sbt", "assembly"
|
|
libexec.install Dir["server/target/scala-*/cromwell-*.jar"][0] => "cromwell.jar"
|
|
libexec.install Dir["womtool/target/scala-*/womtool-*.jar"][0] => "womtool.jar"
|
|
else
|
|
libexec.install "cromwell-#{version}.jar" => "cromwell.jar"
|
|
resource("womtool").stage do
|
|
libexec.install "womtool-#{version}.jar" => "womtool.jar"
|
|
end
|
|
end
|
|
|
|
(bin/"cromwell").write <<~EOS
|
|
#!/bin/bash
|
|
exec "#{Formula["openjdk"].opt_bin}/java" $JAVA_OPTS -jar "#{libexec}/cromwell.jar" "$@"
|
|
EOS
|
|
(bin/"womtool").write <<~EOS
|
|
#!/bin/bash
|
|
exec "#{Formula["openjdk"].opt_bin}/java" -jar "#{libexec}/womtool.jar" "$@"
|
|
EOS
|
|
end
|
|
|
|
test do
|
|
(testpath/"hello.wdl").write <<~EOS
|
|
task hello {
|
|
String name
|
|
|
|
command {
|
|
echo 'hello ${name}!'
|
|
}
|
|
output {
|
|
File response = stdout()
|
|
}
|
|
}
|
|
|
|
workflow test {
|
|
call hello
|
|
}
|
|
EOS
|
|
|
|
(testpath/"hello.json").write <<~EOS
|
|
{
|
|
"test.hello.name": "world"
|
|
}
|
|
EOS
|
|
|
|
result = shell_output("#{bin}/cromwell run --inputs hello.json hello.wdl")
|
|
|
|
assert_match "test.hello.response", result
|
|
end
|
|
end
|