39 lines
1.4 KiB
Ruby
39 lines
1.4 KiB
Ruby
class Bcftools < Formula
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desc "Tools for BCF/VCF files and variant calling from samtools"
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homepage "https://www.htslib.org/"
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url "https://github.com/samtools/bcftools/releases/download/1.11/bcftools-1.11.tar.bz2"
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sha256 "3ceee47456ec481f34fa6c34beb6fe892b5b365933191132721fdf126e45a064"
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license "MIT"
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livecheck do
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url :stable
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strategy :github_latest
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end
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bottle do
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sha256 arm64_big_sur: "59762e9109882da66c1ebf0d0381f5d38cada1e58732025f0c91ab9cb85f0031"
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sha256 big_sur: "67d1219c5df4b512f08199740257e15b38422ba461c2de3ef2ed0697c8e28305"
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sha256 catalina: "fb3b25ef0fa059b400d4094e9719208c74b7665c45d378aec46f26efe5c179c6"
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sha256 mojave: "cbc6f8a457ddb9d4e6c14a1b5f78023f66305aa9df7f8495252b9a774821fec9"
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sha256 high_sierra: "d6ea207bfe680f637147e39e7cf2f3311709dc3c1964bdf5d3506d13200da7a8"
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end
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depends_on "gsl"
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depends_on "htslib"
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depends_on "xz"
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def install
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system "./configure", "--prefix=#{prefix}",
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"--with-htslib=#{Formula["htslib"].opt_prefix}",
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"--enable-libgsl"
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system "make", "install"
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pkgshare.install "test/query.vcf"
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end
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test do
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output = shell_output("#{bin}/bcftools stats #{pkgshare}/query.vcf")
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assert_match "number of SNPs:\t3", output
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assert_match "fixploidy", shell_output("#{bin}/bcftools plugin -l")
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end
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end
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