42 lines
1.7 KiB
Ruby
42 lines
1.7 KiB
Ruby
class Minimap2 < Formula
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desc "Versatile pairwise aligner for genomic and spliced nucleotide sequences"
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homepage "https://lh3.github.io/minimap2"
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url "https://github.com/lh3/minimap2/archive/refs/tags/v2.24.tar.gz"
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sha256 "2e3264300661cf1fce6adabffe6970ec59d46f3e8150dd40fa4501ff4f6c0dbc"
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license "MIT"
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livecheck do
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url :stable
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regex(/^v?(\d+(?:\.\d+)+)$/i)
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end
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bottle do
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sha256 cellar: :any_skip_relocation, arm64_ventura: "8e3edfa49549eacef30b1d7e2a3ff3cdaff1269fe6c7e47aae5718025d385e27"
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sha256 cellar: :any_skip_relocation, arm64_monterey: "22995a1c375367bea1d8cf7c543c26eded794df72b09915e0d3858e11277dcdb"
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sha256 cellar: :any_skip_relocation, arm64_big_sur: "1894aa9bd2241edc817f29a5672614ab47d263529e549914df2031e14ee80017"
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sha256 cellar: :any_skip_relocation, ventura: "0192a7524eaf07f167af3bd71bd1ffd52b26e848bbd88d0d9a52d4df97b664c2"
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sha256 cellar: :any_skip_relocation, monterey: "66426ade59e9eb89716b9ff7d197ba45cd3dd247da46d2be4e113580ee9cfaf3"
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sha256 cellar: :any_skip_relocation, big_sur: "f9e3dbdb1a10462e980a03133b46b3be3b032f551666178b43adf204c0bd9956"
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sha256 cellar: :any_skip_relocation, catalina: "76478e8d72e98c73004af1d6d4f2a76b6c91715e06a847b9af672edf979b55e4"
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sha256 cellar: :any_skip_relocation, x86_64_linux: "96c6a7109e98755e10b86f21ed922c91e34ded9f6727f90e8ffd8fc75984f267"
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end
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uses_from_macos "zlib"
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def install
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if Hardware::CPU.arm?
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system "make", "arm_neon=1", "aarch64=1"
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else
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system "make"
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end
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bin.install "minimap2"
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pkgshare.install "test"
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end
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test do
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cp_r pkgshare/"test/.", testpath
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output = shell_output("#{bin}/minimap2 -a MT-human.fa MT-orang.fa 2>&1")
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assert_match "mapped 1 sequences", output
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end
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end
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