83 lines
2.9 KiB
Ruby
83 lines
2.9 KiB
Ruby
class Mmseqs2 < Formula
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desc "Software suite for very fast sequence search and clustering"
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homepage "https://mmseqs.com/"
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url "https://github.com/soedinglab/MMseqs2/archive/14-7e284.tar.gz"
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version "14-7e284"
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sha256 "a15fd59b121073fdcc8b259fc703e5ce4c671d2c56eb5c027749f4bd4c28dfe1"
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license "GPL-3.0-or-later"
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head "https://github.com/soedinglab/MMseqs2.git", branch: "master"
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bottle do
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rebuild 1
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sha256 cellar: :any_skip_relocation, arm64_ventura: "67ab6bae6d53d0ae65dd6a49f0d5dbe57eacf817ce7c0d684b8b54b845d1af61"
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sha256 cellar: :any_skip_relocation, arm64_monterey: "17c64802df51661ae64fab38d1ef34d6fd5764b22fb0b9d741c5e67f713593f2"
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sha256 cellar: :any_skip_relocation, arm64_big_sur: "efe40f0e8d4ffa862f09aec630203447d41f4d3a568e8639a7b9443367f7f2c1"
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sha256 cellar: :any_skip_relocation, ventura: "bfd8aa126d8adce2baa635fd49378f41f7016aef8a1d5f4039b5c8487ea330eb"
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sha256 cellar: :any_skip_relocation, monterey: "a204fe616c7f2daa544a27354cc2fdfa3d887a6fa7e5b46dd3b6082881bc0d41"
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sha256 cellar: :any_skip_relocation, big_sur: "89e1fcf1aad609ac81b1c6a739ae2f27eb507c374409a26f9a5b3ead1a4036a3"
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sha256 cellar: :any_skip_relocation, x86_64_linux: "5915a38fefb90dd7ed9922354b9842a27c843536e318067937112b2f34959b29"
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end
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depends_on "cmake" => [:build, :test]
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depends_on "wget"
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uses_from_macos "bzip2"
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uses_from_macos "zlib"
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on_macos do
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depends_on "libomp"
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end
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on_linux do
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depends_on "gawk"
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end
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resource "documentation" do
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url "https://github.com/soedinglab/MMseqs2.wiki.git",
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revision: "4cd4a50c83d72dc60d75dc79afe1b9b67b5e775d"
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end
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resource "testdata" do
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url "https://github.com/soedinglab/MMseqs2/releases/download/12-113e3/MMseqs2-Regression-Minimal.zip"
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sha256 "ab0c2953d1c27736c22a57a1ccbb976c1320435fad82b5c579dbd716b7bae4ce"
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end
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def install
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args = *std_cmake_args << "-DHAVE_TESTS=0" << "-DHAVE_MPI=0"
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args << "-DVERSION_OVERRIDE=#{version}"
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args << if Hardware::CPU.arm?
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"-DHAVE_ARM8=1"
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else
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"-DHAVE_SSE4_1=1"
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end
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if OS.mac?
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libomp = Formula["libomp"]
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args << "-DOpenMP_C_FLAGS=-Xpreprocessor -fopenmp -I#{libomp.opt_include}"
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args << "-DOpenMP_C_LIB_NAMES=omp"
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args << "-DOpenMP_CXX_FLAGS=-Xpreprocessor -fopenmp -I#{libomp.opt_include}"
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args << "-DOpenMP_CXX_LIB_NAMES=omp"
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args << "-DOpenMP_omp_LIBRARY=#{libomp.opt_lib}/libomp.a"
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end
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system "cmake", ".", *args
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system "make", "install"
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resource("documentation").stage { doc.install Dir["*"] }
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pkgshare.install "examples"
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bash_completion.install "util/bash-completion.sh" => "mmseqs.sh"
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end
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def caveats
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on_intel do
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"MMseqs2 requires at least SSE4.1 CPU instruction support." unless Hardware::CPU.sse4?
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end
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end
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test do
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resource("testdata").stage do
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system "./run_regression.sh", "#{bin}/mmseqs", "scratch"
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end
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end
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end
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