86 lines
3.0 KiB
Ruby
86 lines
3.0 KiB
Ruby
class RaxmlNg < Formula
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desc "RAxML Next Generation: faster, easier-to-use and more flexible"
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homepage "https://sco.h-its.org/exelixis/web/software/raxml/"
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url "https://github.com/amkozlov/raxml-ng.git",
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tag: "1.1.0",
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revision: "9b8150852c21fd0caa764752797e17382fc03aa0"
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license "AGPL-3.0-or-later"
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bottle do
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sha256 cellar: :any, arm64_monterey: "cebfd84802dfae494b3de15a6e01ce3843511f473227960529db2a7b6ad59996"
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sha256 cellar: :any, arm64_big_sur: "f71158d4e24298bede0e7cd59e47e8e96c1bd9be6670ac988568dc41103ef2ad"
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sha256 cellar: :any, monterey: "bc14e35183077c0a9bf381aea75f73d08e9acbf3c02e8285c558c4dc1ea4f42b"
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sha256 cellar: :any, big_sur: "fff2eeb8aa6e98b22debfb85bbc87ada14144223ca252e5ece4a7197c1771adf"
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sha256 cellar: :any, catalina: "14a55e52a083ded0b9c9c35778c73303f1d968a9826ac2049457a319ae823c5d"
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sha256 cellar: :any_skip_relocation, x86_64_linux: "17a1c0ffcb195cdcf3d3ed4aa70f7de5b863452b3139e9b01851a3a25b939ef5"
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end
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depends_on "autoconf" => :build
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depends_on "automake" => :build
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depends_on "cmake" => :build
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depends_on "libtool" => :build
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depends_on "gmp"
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depends_on "open-mpi"
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uses_from_macos "bison" => :build
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uses_from_macos "flex" => :build
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# Backport ARM support. Remove in the next release.
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# Ref: https://github.com/amkozlov/raxml-ng/commit/6a8f3d98ba0243b9f1452e0f7aab928e45d59b6f
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on_arm do
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patch :DATA
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patch do
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url "https://github.com/xflouris/libpll-2/commit/201983d128aa34e658d145e99ad775f441b42197.patch?full_index=1"
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sha256 "6f14c55450567672aa7c2b82dcce19c6e00395f7f9b8ed7529a18b3030e70e16"
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directory "libs/pll-modules/libs/libpll"
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end
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end
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resource "homebrew-example" do
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url "https://sco.h-its.org/exelixis/resource/download/hands-on/dna.phy"
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sha256 "c2adc42823313831b97af76b3b1503b84573f10d9d0d563be5815cde0effe0c2"
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end
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def install
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args = std_cmake_args + ["-DUSE_GMP=ON"]
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mkdir "build" do
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system "cmake", "..", *args
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system "make", "install"
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end
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mkdir "build_mpi" do
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ENV["CC"] = "mpicc"
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ENV["CXX"] = "mpicxx"
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system "cmake", "..", *args, "-DUSE_MPI=ON", "-DRAXML_BINARY_NAME=raxml-ng-mpi"
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system "make", "install"
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end
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end
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test do
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testpath.install resource("homebrew-example")
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system "#{bin}/raxml-ng", "--msa", "dna.phy", "--start", "--model", "GTR"
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end
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end
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__END__
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diff --git a/src/util/sysutil.cpp b/src/util/sysutil.cpp
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index 8d6501f..cdc4c72 100644
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--- a/src/util/sysutil.cpp
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+++ b/src/util/sysutil.cpp
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@@ -1,4 +1,4 @@
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-#ifndef _WIN32
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+#if (!defined(_WIN32) && !defined(__aarch64__))
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#include <cpuid.h>
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#endif
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#include <sys/time.h>
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@@ -170,7 +170,9 @@ unsigned long sysutil_get_memtotal(bool ignore_errors)
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static void get_cpuid(int32_t out[4], int32_t x)
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{
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-#ifdef _WIN32
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+#ifdef __aarch64__
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+// not supported
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+#elif defined(_WIN32)
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__cpuid(out, x);
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#else
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__cpuid_count(x, 0, out[0], out[1], out[2], out[3]);
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