58 lines
2.2 KiB
Ruby
58 lines
2.2 KiB
Ruby
class Beagle < Formula
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desc "Evaluate the likelihood of sequence evolution on trees"
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homepage "https://github.com/beagle-dev/beagle-lib"
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url "https://github.com/beagle-dev/beagle-lib/archive/v3.1.2.tar.gz"
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sha256 "dd872b484a3a9f0bce369465e60ccf4e4c0cd7bd5ce41499415366019f236275"
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license "LGPL-3.0-or-later"
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revision 1
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livecheck do
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url :stable
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regex(/^v?(\d+(?:\.\d+)+)$/i)
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end
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bottle do
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rebuild 1
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sha256 cellar: :any, arm64_monterey: "b3ba59f1f821ffd6b073b24aa1a0c2afcd32cd70ec26959e98fe438626e9732a"
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sha256 cellar: :any, arm64_big_sur: "98ba4534124ee1b466109ebd4eb59064357edc3094d1cbd7339b3da874b12a9e"
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sha256 cellar: :any, monterey: "5b0c94a2aa704ef61a443ca0b0750a26980e627b69babcf337c73409d6132364"
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sha256 cellar: :any, big_sur: "88810a46fa5631d6bc10262ad334dc6039c93045442836fc690b2dc277513690"
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sha256 cellar: :any, catalina: "a7f09cd317d3bf0bb3993ce46cfe862d92427aedce3c1a68ca60dd3954ae7475"
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sha256 cellar: :any, mojave: "29c47e508a3e39bce6891219f6ad223b8d8579bd1554ce1382b7dfe3e370e139"
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sha256 cellar: :any_skip_relocation, x86_64_linux: "1af7280eaec10e6a5e335326793ca36e36e8b41e507ea891ff3bbfdb3d453d01"
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end
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depends_on "autoconf" => :build
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depends_on "automake" => :build
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depends_on "doxygen" => :build
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depends_on "libtool" => :build
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depends_on "openjdk" => [:build, :test]
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def install
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args = std_configure_args + %w[--without-cuda --disable-libtool-dev]
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args << "--disable-sse" if Hardware::CPU.arm?
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system "./autogen.sh"
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system "./configure", *args
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system "make", "install"
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end
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test do
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(testpath/"test.cpp").write <<~EOS
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#include "libhmsbeagle/platform.h"
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int main() { return 0; }
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EOS
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(testpath/"T.java").write <<~EOS
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class T {
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static { System.loadLibrary("hmsbeagle-jni"); }
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public static void main(String[] args) {}
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}
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EOS
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system ENV.cxx, "-I#{include}/libhmsbeagle-1",
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testpath/"test.cpp", "-o", "test"
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system "./test"
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system "#{Formula["openjdk"].bin}/javac", "T.java"
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system "#{Formula["openjdk"].bin}/java", "-Djava.library.path=#{lib}", "T"
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end
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end
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