55 lines
2.0 KiB
Ruby
55 lines
2.0 KiB
Ruby
class Genometools < Formula
|
|
desc "Versatile open source genome analysis software"
|
|
homepage "http://genometools.org/"
|
|
# genometools does not have source code on par with their binary dist on their website
|
|
url "https://github.com/genometools/genometools/archive/v1.6.2.tar.gz"
|
|
sha256 "974825ddc42602bdce3d5fbe2b6e2726e7a35e81b532a0dc236f6e375d18adac"
|
|
license "ISC"
|
|
revision 1
|
|
head "https://github.com/genometools/genometools.git", branch: "master"
|
|
|
|
bottle do
|
|
sha256 cellar: :any, arm64_monterey: "b09bb366e3e15f77d94aab5e6bdb072e9304534245a730783df426deccfe040a"
|
|
sha256 cellar: :any, arm64_big_sur: "f350d9c4cac62bcb0b3de1153d4f2fd760b529f02bd9a43f21c91ecfa5e0b47b"
|
|
sha256 cellar: :any, monterey: "27d16515d739177e10547d62c76b0b20af221979572f05982d3a37392bf52dcd"
|
|
sha256 cellar: :any, big_sur: "b97131de84349e7e805095564ba995eb6d06e99b8e0f9b4f5b943e42af17997e"
|
|
sha256 cellar: :any, catalina: "4b59bf76b39c797a21e6cd2acb90fdf273316ff73cd3c97ede296f672493a42a"
|
|
sha256 cellar: :any_skip_relocation, x86_64_linux: "3ee8f9d26f65607d15f8113c45c9ccf670fd01a9d12e4ca764d9ee3a0e4705b1"
|
|
end
|
|
|
|
depends_on "pkg-config" => :build
|
|
depends_on "cairo"
|
|
depends_on "pango"
|
|
depends_on "python@3.10"
|
|
|
|
on_linux do
|
|
depends_on "libpthread-stubs" => :build
|
|
end
|
|
|
|
conflicts_with "libslax", because: "both install `bin/gt`"
|
|
|
|
def python3
|
|
"python3.10"
|
|
end
|
|
|
|
def install
|
|
system "make", "prefix=#{prefix}"
|
|
system "make", "install", "prefix=#{prefix}"
|
|
|
|
cd "gtpython" do
|
|
# Use the shared library from this specific version of genometools.
|
|
inreplace "gt/dlload.py",
|
|
"gtlib = CDLL(\"libgenometools\" + soext)",
|
|
"gtlib = CDLL(\"#{lib}/libgenometools\" + soext)"
|
|
|
|
system python3, *Language::Python.setup_install_args(prefix, python3)
|
|
system python3, "-m", "unittest", "discover", "tests"
|
|
end
|
|
end
|
|
|
|
test do
|
|
system "#{bin}/gt", "-test"
|
|
system python3, "-c", "import gt"
|
|
end
|
|
end
|