47 lines
1.7 KiB
Ruby
47 lines
1.7 KiB
Ruby
class Htslib < Formula
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desc "C library for high-throughput sequencing data formats"
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homepage "https://www.htslib.org/"
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url "https://github.com/samtools/htslib/releases/download/1.15.1/htslib-1.15.1.tar.bz2"
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sha256 "8d7f8bf9658226942eeab70af2a22aca618577eaa8fe2ed9416ee306d5351aa1"
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license "MIT"
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livecheck do
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url :stable
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strategy :github_latest
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end
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bottle do
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sha256 cellar: :any, arm64_monterey: "126ee5017717e388750cafbea6b2915b5550c9be5f5623798e173e3ed35d91e5"
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sha256 cellar: :any, arm64_big_sur: "6ffc3560ccf65563420b32c35177b738783fc5b7499c2e16efdf6f2157264497"
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sha256 cellar: :any, monterey: "51952a370f820e68811bd9c891c2f134eb0366f751acf5f23e665ee2b2b15a65"
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sha256 cellar: :any, big_sur: "ea69b2d7b0f29325dda506c73a8cd726fac704397d2d991422660b0f56f13f53"
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sha256 cellar: :any, catalina: "fad753cd51694302972903cf8b4a8655aa5a76014a7a1ed272ec611ab1791da0"
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sha256 cellar: :any_skip_relocation, x86_64_linux: "4888416ae72370da97c251d870fbc5e88f53b3abdf262ff73779b9095b55a365"
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end
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depends_on "xz"
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uses_from_macos "bzip2"
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uses_from_macos "curl"
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uses_from_macos "zlib"
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def install
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system "./configure", "--prefix=#{prefix}", "--enable-libcurl"
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system "make", "install"
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end
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test do
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sam = testpath/"test.sam"
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sam.write <<~EOS
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@SQ SN:chr1 LN:500
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r1 0 chr1 100 0 4M * 0 0 ATGC ABCD
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r2 0 chr1 200 0 4M * 0 0 AATT EFGH
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EOS
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assert_match "SAM", shell_output("#{bin}/htsfile #{sam}")
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system "#{bin}/bgzip -c #{sam} > sam.gz"
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assert_predicate testpath/"sam.gz", :exist?
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system "#{bin}/tabix", "-p", "sam", "sam.gz"
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assert_predicate testpath/"sam.gz.tbi", :exist?
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end
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end
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