49 lines
1.9 KiB
Ruby
49 lines
1.9 KiB
Ruby
class Diamond < Formula
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desc "Accelerated BLAST compatible local sequence aligner"
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homepage "https://www.wsi.uni-tuebingen.de/lehrstuehle/algorithms-in-bioinformatics/software/diamond/"
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url "https://github.com/bbuchfink/diamond/archive/v0.9.36.tar.gz"
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sha256 "870af89606330f6c0b57ed478d2d8237334ce8f5630eac770399ff431948bd59"
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license "GPL-3.0"
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bottle do
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cellar :any_skip_relocation
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sha256 "f68458d1886716c4ee0c34e31187ea85e149cfcd72b190050ab464e5657a600a" => :catalina
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sha256 "722f1d03a45520b61f51afee74e119732bae1fb90a775a0433382ab7ccf67d61" => :mojave
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sha256 "ebda6089e20340b49dc7dc3144cc459d3a9b7e075dd699249e2fc6be61bf5a6e" => :high_sierra
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end
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depends_on "cmake" => :build
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uses_from_macos "zlib"
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def install
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system "cmake", ".", *std_cmake_args
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system "make", "install"
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end
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test do
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(testpath/"nr.faa").write <<~EOS
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>gnl|alu|HSU14568_Alu_Sb_consensus_rf1
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grarwltpvipalweaeaggsrgqeietilantvkprlyXkyknXpgvvagacspsysgg
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XgrrmaXtreaelavsrdratalqpgrqsetpsqkk
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>gnl|alu|HSU14568_Alu_Sb_consensus_rf2
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agrggsrlXsqhfgrprradhevrrsrpswltrXnpvstkntkisrawwrapvvpatrea
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eagewrepgrrslqXaeiaplhsslgdrarlrlkk
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>gnl|alu|HSU14568_Alu_Sb_consensus_rf3
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pgavahacnpstlggrggritrsgdrdhpgXhgetpsllkiqklagrgggrlXsqllgrl
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rqengvnpgggacseprsrhctpawaterdsvskk
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>gnl|alu|HSU14568_Alu_Sb_consensus_rf-1
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fflrrslalsprlecsgaisahcklrlpgsrhspasasrvagttgarhharlifvflvet
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gfhrvsqdgldlltsXsarlglpkcwdyrrepprpa
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>gnl|alu|HSU14568_Alu_Sb_consensus_rf-2
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ffXdgvslcrpgwsavarsrltassasrvhaillpqppeXlglqapattpgXflyfXXrr
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gftvlarmvsisXprdppasasqsagitgvshrar
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>gnl|alu|HSU14568_Alu_Sb_consensus_rf-3
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ffetesrsvaqagvqwrdlgslqapppgftpfsclslpsswdyrrppprpanfcifsrdg
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vspcXpgwsrspdlvirpprppkvlglqaXatapg
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EOS
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output = shell_output("#{bin}/diamond makedb --in nr.faa -d nr 2>&1")
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assert_match "Processed 6 sequences, 572 letters.", output
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end
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end
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