36 lines
1.6 KiB
Ruby
36 lines
1.6 KiB
Ruby
class Samtools < Formula
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desc "Tools for manipulating next-generation sequencing data"
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homepage "https://www.htslib.org/"
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url "https://github.com/samtools/samtools/releases/download/1.14/samtools-1.14.tar.bz2"
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sha256 "9341dabaa98b0ea7d60fd47e42af25df43a7d3d64d8e654cdf852974546b7d74"
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license "MIT"
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bottle do
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sha256 cellar: :any, arm64_monterey: "3810531d7ba40d9292e06eb7a969ae2f30ec439c8254d65858108d35813d013b"
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sha256 cellar: :any, arm64_big_sur: "1b094875a3cd7111cd2d7194acc600ad03ccef038ec9fae76b514f3351b1f9c1"
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sha256 cellar: :any, monterey: "3782db6cc058505537f1722dc8bd98f1406e0f72ccb878dd0d4c61990359252c"
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sha256 cellar: :any, big_sur: "fd80f26de0ab3138062c69451e7ec99d313d3d9f817c61ee975c623813339302"
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sha256 cellar: :any, catalina: "08cde6e2083249a7099026da42111e40ad13cb21f6ae3a1de3048ef78c4e9d81"
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sha256 cellar: :any_skip_relocation, x86_64_linux: "213254affeaf2babcfb46d41b873572940ee584468abc291c985a90b31bde3e1"
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end
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depends_on "htslib"
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uses_from_macos "ncurses"
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def install
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system "./configure", "--prefix=#{prefix}",
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"--with-htslib=#{Formula["htslib"].opt_prefix}"
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system "make", "install"
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end
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test do
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(testpath/"test.fasta").write <<~EOS
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>U00096.2:1-70
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AGCTTTTCATTCTGACTGCAACGGGCAATATGTCTCTGTGTGGATTAAAAAAAGAGTGTCTGATAGCAGC
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EOS
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system bin/"samtools", "faidx", "test.fasta"
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assert_equal "U00096.2:1-70\t70\t15\t70\t71\n", (testpath/"test.fasta.fai").read
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end
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end
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