51 lines
2.4 KiB
Ruby
51 lines
2.4 KiB
Ruby
class Diamond < Formula
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desc "Accelerated BLAST compatible local sequence aligner"
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homepage "https://www.wsi.uni-tuebingen.de/lehrstuehle/algorithms-in-bioinformatics/software/diamond/"
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url "https://github.com/bbuchfink/diamond/archive/v2.0.14.tar.gz"
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sha256 "3eaef2b957e4ba845eac27a2ca3249aae4259ff1fe0ff5a21b094481328fdc53"
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license "GPL-3.0-or-later"
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bottle do
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sha256 cellar: :any_skip_relocation, arm64_monterey: "b25c5a7ba1e13f49d35da8b4900cb32cd0c2f7b4fe50c817c13d8b3e34f0ca60"
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sha256 cellar: :any_skip_relocation, arm64_big_sur: "ab37a61dbad817a0e4dca0310e0473420fde013ffc15f7af5725cde4be961cb0"
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sha256 cellar: :any_skip_relocation, monterey: "ce33ea102c71dd819f4f9d9e3ba5ebffaa259de08e768c1ceeebec4a42684628"
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sha256 cellar: :any_skip_relocation, big_sur: "72fb7f8ebf9a4ab1cc82ff79b935d37131c00e8cbbae8d9fe159d781d93b30f7"
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sha256 cellar: :any_skip_relocation, catalina: "431477a165d719fa67ece1e9bedea04c0377d6a7d4513f631d8bf1ad2e9d859f"
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sha256 cellar: :any_skip_relocation, x86_64_linux: "2d2e5729a550d2d2394448aaebd968875ecacef041789a0bab314e398701bfe8"
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end
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depends_on "cmake" => :build
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uses_from_macos "zlib"
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def install
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system "cmake", ".", *std_cmake_args
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system "make", "install"
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end
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test do
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(testpath/"nr.faa").write <<~EOS
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>gnl|alu|HSU14568_Alu_Sb_consensus_rf1
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grarwltpvipalweaeaggsrgqeietilantvkprlyXkyknXpgvvagacspsysgg
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XgrrmaXtreaelavsrdratalqpgrqsetpsqkk
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>gnl|alu|HSU14568_Alu_Sb_consensus_rf2
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agrggsrlXsqhfgrprradhevrrsrpswltrXnpvstkntkisrawwrapvvpatrea
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eagewrepgrrslqXaeiaplhsslgdrarlrlkk
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>gnl|alu|HSU14568_Alu_Sb_consensus_rf3
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pgavahacnpstlggrggritrsgdrdhpgXhgetpsllkiqklagrgggrlXsqllgrl
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rqengvnpgggacseprsrhctpawaterdsvskk
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>gnl|alu|HSU14568_Alu_Sb_consensus_rf-1
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fflrrslalsprlecsgaisahcklrlpgsrhspasasrvagttgarhharlifvflvet
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gfhrvsqdgldlltsXsarlglpkcwdyrrepprpa
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>gnl|alu|HSU14568_Alu_Sb_consensus_rf-2
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ffXdgvslcrpgwsavarsrltassasrvhaillpqppeXlglqapattpgXflyfXXrr
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gftvlarmvsisXprdppasasqsagitgvshrar
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>gnl|alu|HSU14568_Alu_Sb_consensus_rf-3
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ffetesrsvaqagvqwrdlgslqapppgftpfsclslpsswdyrrppprpanfcifsrdg
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vspcXpgwsrspdlvirpprppkvlglqaXatapg
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EOS
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output = shell_output("#{bin}/diamond makedb --in nr.faa -d nr 2>&1")
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assert_match "Database sequences 6\n Database letters 572", output
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end
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end
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