45 lines
1.6 KiB
Ruby
45 lines
1.6 KiB
Ruby
class Blast < Formula
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desc "Basic Local Alignment Search Tool"
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homepage "https://blast.ncbi.nlm.nih.gov/"
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url "https://ftp.ncbi.nlm.nih.gov/blast/executables/blast+/2.9.0/ncbi-blast-2.9.0+-src.tar.gz"
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version "2.9.0"
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sha256 "a390cc2d7a09422759fc178db84de9def822cbe485916bbb2ec0d215dacdc257"
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bottle do
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sha256 "9fef86c970bdc8556a479920bffd3d33a57c0ce7bdcad4c44f2469e116f940aa" => :catalina
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sha256 "e07f0dafa79bd72359cf467ba8cf8e51d76665c1571128dc7cc5d7857c5b92d8" => :mojave
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sha256 "3de6646d96d9fdbf6b76fdf57a14612c8eebbfa1327f0d42e0402b516b6298ec" => :high_sierra
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sha256 "57f2e2f9c65aa5364eb72a9bbdf6948a30af2975a53445a4b43203f56395da7c" => :sierra
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end
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depends_on "lmdb"
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conflicts_with "proj", :because => "both install a `libproj.a` library"
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def install
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cd "c++" do
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# Use ./configure --without-boost to fix
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# error: allocating an object of abstract class type 'ncbi::CNcbiBoostLogger'
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# Boost is used only for unit tests.
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# See https://github.com/Homebrew/homebrew-science/pull/3537#issuecomment-220136266
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system "./configure", "--prefix=#{prefix}",
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"--without-debug",
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"--without-boost"
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# Fix the error: install: ReleaseMT/lib/*.*: No such file or directory
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system "make"
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system "make", "install"
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end
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end
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test do
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(testpath/"test.fasta").write <<~EOS
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>U00096.2:1-70
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AGCTTTTCATTCTGACTGCAACGGGCAATATGTCTCTGTGTGGATTAAAAAAAGAGTGTCTGATAGCAGC
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EOS
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output = shell_output("#{bin}/blastn -query test.fasta -subject test.fasta")
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assert_match "Identities = 70/70", output
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end
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end
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