46 lines
1.7 KiB
Ruby
46 lines
1.7 KiB
Ruby
class Blast < Formula
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desc "Basic Local Alignment Search Tool"
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homepage "https://blast.ncbi.nlm.nih.gov/"
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url "https://ftp.ncbi.nlm.nih.gov/blast/executables/blast+/LATEST/ncbi-blast-2.7.1+-src.tar.gz"
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mirror "http://mirrors.vbi.vt.edu/mirrors/ftp.ncbi.nih.gov/blast/executables/LATEST/ncbi-blast-2.7.1+-src.tar.gz"
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version "2.7.1"
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sha256 "10a78d3007413a6d4c983d2acbf03ef84b622b82bd9a59c6bd9fbdde9d0298ca"
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bottle do
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sha256 "13e0286489e2b28adbe3fc6ef82a26f3e081b44a0ce99f3212a0c4d7da981b3a" => :high_sierra
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sha256 "a868633034dc12160109ee44e5415577967e2ceabaad3246881abaf07c57a198" => :sierra
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sha256 "110a62423f43f3618aadc5a149c238302af30399426346e571e23f252f8e6bab" => :el_capitan
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end
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depends_on "lmdb"
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depends_on "python@2"
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conflicts_with "proj", :because => "both install a `libproj.a` library"
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def install
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cd "c++" do
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# Use ./configure --without-boost to fix
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# error: allocating an object of abstract class type 'ncbi::CNcbiBoostLogger'
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# Boost is used only for unit tests.
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# See https://github.com/Homebrew/homebrew-science/pull/3537#issuecomment-220136266
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system "./configure", "--prefix=#{prefix}",
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"--without-debug",
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"--without-boost"
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# Fix the error: install: ReleaseMT/lib/*.*: No such file or directory
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system "make"
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system "make", "install"
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end
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end
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test do
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(testpath/"test.fasta").write <<~EOS
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>U00096.2:1-70
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AGCTTTTCATTCTGACTGCAACGGGCAATATGTCTCTGTGTGGATTAAAAAAAGAGTGTCTGATAGCAGC
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EOS
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output = shell_output("#{bin}/blastn -query test.fasta -subject test.fasta")
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assert_match "Identities = 70/70", output
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end
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end
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