36 lines
1.2 KiB
Ruby
36 lines
1.2 KiB
Ruby
class Igv < Formula
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desc "Interactive Genomics Viewer"
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homepage "https://www.broadinstitute.org/software/igv"
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url "https://data.broadinstitute.org/igv/projects/downloads/2.14/IGV_2.14.1.zip"
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sha256 "7ff649d2acb613e0dadbb07b94cc91ba6374cc699f2a19051b2966e3cea33f5f"
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license "MIT"
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livecheck do
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url "https://software.broadinstitute.org/software/igv/download"
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regex(/href=.*?IGV[._-]v?(\d+(?:\.\d+)+)\.zip/i)
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end
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bottle do
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sha256 cellar: :any_skip_relocation, all: "b3eadc87f195d8921f2b10eaee33606099fb26eb07197ef537ed4c5945933f1c"
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end
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depends_on "openjdk"
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def install
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inreplace ["igv.sh", "igvtools"], /^prefix=.*/, "prefix=#{libexec}"
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bin.install "igv.sh" => "igv"
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bin.install "igvtools"
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libexec.install "igv.args", "lib"
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bin.env_script_all_files libexec, Language::Java.overridable_java_home_env
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end
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test do
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assert_match "Usage:", shell_output("#{bin}/igvtools")
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assert_match "org/broad/igv/ui/IGV.class", shell_output("#{Formula["openjdk"].bin}/jar tf #{libexec}/lib/igv.jar")
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ENV.append "_JAVA_OPTIONS", "-Duser.home=#{testpath}"
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(testpath/"script").write "exit"
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assert_match "Using system JDK.", shell_output("#{bin}/igv -b script")
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end
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end
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