38 lines
1.6 KiB
Ruby
38 lines
1.6 KiB
Ruby
class Bowtie2 < Formula
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desc "Fast and sensitive gapped read aligner"
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homepage "https://bowtie-bio.sourceforge.io/bowtie2/"
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url "https://github.com/BenLangmead/bowtie2/archive/v2.4.5.tar.gz"
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sha256 "db101391b54a5e0eeed7469b05aee55ee6299558b38607f592f6b35a7d41dcb6"
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license "GPL-3.0-or-later"
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revision 1
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bottle do
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sha256 cellar: :any_skip_relocation, arm64_monterey: "495bc223b670a7e029315ce992dcc0811dc3f63e714c656b6cb84c2f789aa439"
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sha256 cellar: :any_skip_relocation, arm64_big_sur: "cf63043431156ed49e8034700900c508f32e02cd1830a8f815ed83735544dd5b"
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sha256 cellar: :any_skip_relocation, monterey: "bd2176ef8b56c77260602d72566a6ad85240f8c7def21317b31913995e0789d4"
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sha256 cellar: :any_skip_relocation, big_sur: "6f1d5777e5ec4d9aa9ffe38f18278f1a0aba3679d19d5a57a30343074ba25866"
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sha256 cellar: :any_skip_relocation, catalina: "03cd26ce1b340a37c66c1097c426a9e423d6f57bf809558bad577fb827e271d2"
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sha256 cellar: :any_skip_relocation, x86_64_linux: "46f6e5aa64fd0f9564d15f21aa0ac84d9960fb79424539599c284d0f7724e096"
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end
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uses_from_macos "perl"
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uses_from_macos "python", since: :catalina
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uses_from_macos "zlib"
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on_arm do
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depends_on "simde" => :build
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end
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def install
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system "make", "install", "PREFIX=#{prefix}"
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pkgshare.install "example", "scripts"
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end
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test do
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system "#{bin}/bowtie2-build",
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"#{pkgshare}/example/reference/lambda_virus.fa", "lambda_virus"
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assert_predicate testpath/"lambda_virus.1.bt2", :exist?,
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"Failed to create viral alignment lambda_virus.1.bt2"
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end
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end
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