48 lines
1.9 KiB
Ruby
48 lines
1.9 KiB
Ruby
class Diamond < Formula
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desc "Accelerated BLAST compatible local sequence aligner"
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homepage "https://www.wsi.uni-tuebingen.de/lehrstuehle/algorithms-in-bioinformatics/software/diamond/"
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url "https://github.com/bbuchfink/diamond/archive/v0.9.35.tar.gz"
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sha256 "21d25780de6dacf4f965a1c583cf511b19f04def9289387c793e5a175061452d"
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bottle do
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cellar :any_skip_relocation
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sha256 "924260e8b7469bfb2441f4b07605f250f9e820fbd7b6ec00c820a4b00fe0b923" => :catalina
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sha256 "21f906530feeb8cdbbd5e4f158b121c44d576cb1316c2f5cd157245685c2969d" => :mojave
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sha256 "3e33f6e836be02b2b5d8af28753097d0d3c3fba2ae00c4a72b2bf1e7ae1e080e" => :high_sierra
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end
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depends_on "cmake" => :build
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uses_from_macos "zlib"
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def install
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system "cmake", ".", *std_cmake_args
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system "make", "install"
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end
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test do
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(testpath/"nr.faa").write <<~EOS
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>gnl|alu|HSU14568_Alu_Sb_consensus_rf1
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grarwltpvipalweaeaggsrgqeietilantvkprlyXkyknXpgvvagacspsysgg
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XgrrmaXtreaelavsrdratalqpgrqsetpsqkk
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>gnl|alu|HSU14568_Alu_Sb_consensus_rf2
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agrggsrlXsqhfgrprradhevrrsrpswltrXnpvstkntkisrawwrapvvpatrea
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eagewrepgrrslqXaeiaplhsslgdrarlrlkk
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>gnl|alu|HSU14568_Alu_Sb_consensus_rf3
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pgavahacnpstlggrggritrsgdrdhpgXhgetpsllkiqklagrgggrlXsqllgrl
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rqengvnpgggacseprsrhctpawaterdsvskk
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>gnl|alu|HSU14568_Alu_Sb_consensus_rf-1
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fflrrslalsprlecsgaisahcklrlpgsrhspasasrvagttgarhharlifvflvet
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gfhrvsqdgldlltsXsarlglpkcwdyrrepprpa
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>gnl|alu|HSU14568_Alu_Sb_consensus_rf-2
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ffXdgvslcrpgwsavarsrltassasrvhaillpqppeXlglqapattpgXflyfXXrr
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gftvlarmvsisXprdppasasqsagitgvshrar
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>gnl|alu|HSU14568_Alu_Sb_consensus_rf-3
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ffetesrsvaqagvqwrdlgslqapppgftpfsclslpsswdyrrppprpanfcifsrdg
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vspcXpgwsrspdlvirpprppkvlglqaXatapg
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EOS
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output = shell_output("#{bin}/diamond makedb --in nr.faa -d nr 2>&1")
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assert_match "Processed 6 sequences, 572 letters.", output
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end
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end
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