40 lines
1.7 KiB
Ruby
40 lines
1.7 KiB
Ruby
class Igv < Formula
|
|
desc "Interactive Genomics Viewer"
|
|
homepage "https://www.broadinstitute.org/software/igv"
|
|
url "https://data.broadinstitute.org/igv/projects/downloads/2.11/IGV_2.11.2.zip"
|
|
sha256 "d036cdde3a99d1d415b78ed03c9aedf7b2b9fbb2da61e12dade0110956d33382"
|
|
license "MIT"
|
|
|
|
livecheck do
|
|
url "https://software.broadinstitute.org/software/igv/download"
|
|
regex(/href=.*?IGV[._-]v?(\d+(?:\.\d+)+)\.zip/i)
|
|
end
|
|
|
|
bottle do
|
|
sha256 cellar: :any_skip_relocation, arm64_big_sur: "bca9700f55959cc195610c67dd83fd6644c2ac8966d90df476113d3793414b9b"
|
|
sha256 cellar: :any_skip_relocation, big_sur: "bca9700f55959cc195610c67dd83fd6644c2ac8966d90df476113d3793414b9b"
|
|
sha256 cellar: :any_skip_relocation, catalina: "bca9700f55959cc195610c67dd83fd6644c2ac8966d90df476113d3793414b9b"
|
|
sha256 cellar: :any_skip_relocation, mojave: "bca9700f55959cc195610c67dd83fd6644c2ac8966d90df476113d3793414b9b"
|
|
sha256 cellar: :any_skip_relocation, x86_64_linux: "977f5d66ce9c94de6648ac1c71006de38da3d912495598b178e0ccad35a53ceb"
|
|
end
|
|
|
|
depends_on "openjdk"
|
|
|
|
def install
|
|
inreplace ["igv.sh", "igvtools"], /^prefix=.*/, "prefix=#{libexec}"
|
|
bin.install "igv.sh" => "igv"
|
|
bin.install "igvtools"
|
|
libexec.install "igv.args", "lib"
|
|
bin.env_script_all_files libexec, Language::Java.overridable_java_home_env
|
|
end
|
|
|
|
test do
|
|
assert_match "Usage:", shell_output("#{bin}/igvtools")
|
|
assert_match "org/broad/igv/ui/IGV.class", shell_output("#{Formula["openjdk"].bin}/jar tf #{libexec}/lib/igv.jar")
|
|
|
|
ENV.append "_JAVA_OPTIONS", "-Duser.home=#{testpath}"
|
|
(testpath/"script").write "exit"
|
|
assert_match "Version", shell_output("#{bin}/igv -b script")
|
|
end
|
|
end
|