94 lines
3.9 KiB
Ruby
94 lines
3.9 KiB
Ruby
class Snakemake < Formula
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desc "Pythonic workflow system"
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homepage "https://bitbucket.org/snakemake/snakemake/wiki/Home"
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url "https://files.pythonhosted.org/packages/4c/01/195575763c0eb6f4ae44cd28ad2563b1e7f74231adc3e207b032afa78018/snakemake-4.4.0.tar.gz"
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sha256 "5b22093cf1e7022a2d285d06e4aec5a78b95e1c05bd5866dd6839f4f5454173c"
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head "https://bitbucket.org/snakemake/snakemake.git"
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bottle do
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cellar :any_skip_relocation
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sha256 "1d9b1814c8623bcff6080361211cab13ff0f3acf120fd25525c77df644f32528" => :high_sierra
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sha256 "4a73af20a72e5ea1389ecfc9224e67830d8c1883f0b9d9155430d0fbda4ce8af" => :sierra
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sha256 "75f6a8b28d4507f91c3575d2872a150d0cc277c5eaa58c94e49529fd2bf91ad5" => :el_capitan
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end
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depends_on :python3
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resource "appdirs" do
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url "https://files.pythonhosted.org/packages/48/69/d87c60746b393309ca30761f8e2b49473d43450b150cb08f3c6df5c11be5/appdirs-1.4.3.tar.gz"
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sha256 "9e5896d1372858f8dd3344faf4e5014d21849c756c8d5701f78f8a103b372d92"
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end
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resource "certifi" do
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url "https://files.pythonhosted.org/packages/23/3f/8be01c50ed24a4bd6b8da799839066ce0288f66f5e11f0367323467f0cbc/certifi-2017.11.5.tar.gz"
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sha256 "5ec74291ca1136b40f0379e1128ff80e866597e4e2c1e755739a913bbc3613c0"
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end
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resource "chardet" do
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url "https://files.pythonhosted.org/packages/fc/bb/a5768c230f9ddb03acc9ef3f0d4a3cf93462473795d18e9535498c8f929d/chardet-3.0.4.tar.gz"
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sha256 "84ab92ed1c4d4f16916e05906b6b75a6c0fb5db821cc65e70cbd64a3e2a5eaae"
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end
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resource "ConfigArgParse" do
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url "https://files.pythonhosted.org/packages/17/8d/4a41f11b0971017c7001f118be8003da8f7b96b010c66cd792b76658d1e1/ConfigArgParse-0.12.0.tar.gz"
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sha256 "28cd7d67669651f2a4518367838c49539457504584a139709b2b8f6c208ef339"
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end
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resource "idna" do
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url "https://files.pythonhosted.org/packages/f4/bd/0467d62790828c23c47fc1dfa1b1f052b24efdf5290f071c7a91d0d82fd3/idna-2.6.tar.gz"
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sha256 "2c6a5de3089009e3da7c5dde64a141dbc8551d5b7f6cf4ed7c2568d0cc520a8f"
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end
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resource "PyYAML" do
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url "https://files.pythonhosted.org/packages/4a/85/db5a2df477072b2902b0eb892feb37d88ac635d36245a72a6a69b23b383a/PyYAML-3.12.tar.gz"
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sha256 "592766c6303207a20efc445587778322d7f73b161bd994f227adaa341ba212ab"
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end
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resource "ratelimiter" do
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url "https://files.pythonhosted.org/packages/5b/e0/b36010bddcf91444ff51179c076e4a09c513674a56758d7cfea4f6520e29/ratelimiter-1.2.0.post0.tar.gz"
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sha256 "5c395dcabdbbde2e5178ef3f89b568a3066454a6ddc223b76473dac22f89b4f7"
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end
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resource "requests" do
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url "https://files.pythonhosted.org/packages/b0/e1/eab4fc3752e3d240468a8c0b284607899d2fbfb236a56b7377a329aa8d09/requests-2.18.4.tar.gz"
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sha256 "9c443e7324ba5b85070c4a818ade28bfabedf16ea10206da1132edaa6dda237e"
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end
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resource "urllib3" do
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url "https://files.pythonhosted.org/packages/ee/11/7c59620aceedcc1ef65e156cc5ce5a24ef87be4107c2b74458464e437a5d/urllib3-1.22.tar.gz"
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sha256 "cc44da8e1145637334317feebd728bd869a35285b93cbb4cca2577da7e62db4f"
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end
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resource "wrapt" do
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url "https://files.pythonhosted.org/packages/a0/47/66897906448185fcb77fc3c2b1bc20ed0ecca81a0f2f88eda3fc5a34fc3d/wrapt-1.10.11.tar.gz"
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sha256 "d4d560d479f2c21e1b5443bbd15fe7ec4b37fe7e53d335d3b9b0a7b1226fe3c6"
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end
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def install
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xy = Language::Python.major_minor_version "python3"
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ENV.prepend_create_path "PYTHONPATH", libexec/"vendor/lib/python#{xy}/site-packages"
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resources.each do |r|
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r.stage do
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system "python3", *Language::Python.setup_install_args(libexec/"vendor")
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end
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end
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ENV.prepend_create_path "PYTHONPATH", libexec/"lib/python#{xy}/site-packages"
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system "python3", *Language::Python.setup_install_args(libexec)
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bin.install Dir[libexec/"bin/*"]
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bin.env_script_all_files(libexec/"bin", :PYTHONPATH => ENV["PYTHONPATH"])
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end
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test do
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(testpath/"Snakefile").write <<~EOS
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rule testme:
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output:
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"test.out"
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shell:
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"touch {output}"
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EOS
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system "#{bin}/snakemake"
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end
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end
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