28 lines
894 B
Ruby
28 lines
894 B
Ruby
class Seqtk < Formula
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desc "Toolkit for processing sequences in FASTA/Q formats"
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homepage "https://github.com/lh3/seqtk"
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url "https://github.com/lh3/seqtk/archive/v1.3.tar.gz"
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sha256 "5a1687d65690f2f7fa3f998d47c3c5037e792f17ce119dab52fff3cfdca1e563"
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bottle do
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cellar :any_skip_relocation
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sha256 "4f377caf93e5d334e739375a5dcf06782f1d85516988a26df3f8f53d172b1e6f" => :high_sierra
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sha256 "fd3ecced5ba8f5a9eab13f8f2184f6a69d08b58c1ef53ad6e74bb45cab9324f4" => :sierra
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sha256 "55541e7e9249ef15bd4423ad9a45903918c2b4b54f632bc0472fb24aee683701" => :el_capitan
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end
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def install
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system "make"
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bin.install "seqtk"
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end
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test do
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(testpath/"test.fasta").write <<~EOS
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>U00096.2:1-70
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AGCTTTTCATTCTGACTGCAACGGGCAATATGTCT
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CTGTGTGGATTAAAAAAAGAGTGTCTGATAGCAGC
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EOS
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assert_match "TCTCTG", shell_output("#{bin}/seqtk seq test.fasta")
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end
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end
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