56 lines
1.8 KiB
Ruby
56 lines
1.8 KiB
Ruby
class Mmseqs2 < Formula
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desc "Software suite for very fast protein sequence search and clustering"
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homepage "https://mmseqs.org/"
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url "https://github.com/soedinglab/MMseqs2/archive/3-be8f6.tar.gz"
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version "3-be8f6"
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sha256 "7502adcec9f84c560996ced29edec88ce8ec47670da7dae6c7ee50d7b849fe0d"
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bottle do
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cellar :any
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sha256 "0a2bc5f422c1fba52f2e20e3c27559c086bd4f1a652739c32840a730bbcac30e" => :high_sierra
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sha256 "3e0fb89409e53fbef476d40296f35cae6d36018691eb0f72278affb4b8154f23" => :sierra
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sha256 "ecb8fba6928eaf995c8176dcdb44cf13adc0a823b4183ecfe633faf57cc9520c" => :el_capitan
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end
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depends_on "cmake" => :build
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depends_on "gcc"
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cxxstdlib_check :skip
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fails_with :clang # needs OpenMP support
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resource "documentation" do
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url "https://github.com/soedinglab/MMseqs2.wiki.git",
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:revision => "f6b31176d50402ce6070c9557a476e06a872d2ae"
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end
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def install
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args = *std_cmake_args << "-DHAVE_TESTS=0" << "-DHAVE_MPI=0"
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args << "-DVERSION_OVERRIDE=#{version}"
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args << "-DHAVE_SSE4_1=1" if build.bottle?
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system "cmake", ".", *args
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system "make", "install"
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resource("documentation").stage { doc.install Dir["*"] }
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pkgshare.install "examples"
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bash_completion.install "util/bash-completion.sh" => "mmseqs.sh"
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end
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def caveats
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unless Hardware::CPU.sse4?
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"MMseqs2 requires at least SSE4.1 CPU instruction support. The binary will not work correctly."
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end
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end
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test do
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system "#{bin}/mmseqs", "createdb", "#{pkgshare}/examples/QUERY.fasta", "q"
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system "#{bin}/mmseqs", "cluster", "q", "res", "tmp", "-s", "1"
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assert_predicate testpath/"res", :exist?
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assert_predicate (testpath/"res").size, :positive?
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assert_predicate testpath/"res.index", :exist?
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assert_predicate (testpath/"res.index").size, :positive?
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end
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end
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