58 lines
2.5 KiB
Ruby
58 lines
2.5 KiB
Ruby
class Beagle < Formula
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desc "Evaluate the likelihood of sequence evolution on trees"
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homepage "https://github.com/beagle-dev/beagle-lib"
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url "https://github.com/beagle-dev/beagle-lib/archive/v4.0.0.tar.gz"
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sha256 "d197eeb7fe5879dfbae789c459bcc901cb04d52c9cf5ef14fb07ff7a6b74560b"
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license "MIT"
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livecheck do
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url :stable
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regex(/^v?(\d+(?:\.\d+)+)$/i)
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end
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bottle do
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sha256 cellar: :any, arm64_ventura: "e53a62618ddaa8f5cdd3fd99f4cb267b058862f0976f0e84de508f8f340c3623"
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sha256 cellar: :any, arm64_monterey: "417d70e5874ea00a8eb1487ee490e8420599b5a6c8bd9f949b8fa296ade5df11"
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sha256 cellar: :any, arm64_big_sur: "1ea7c6f271742ecabc2b102d698bc4e65b5ab11e4445dc4829aa8cfc54c68d02"
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sha256 cellar: :any, ventura: "5fdc288d4c435430c1ef58672a5114cdca1e2b2a8a9d09b25fb782b1df8a9e0e"
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sha256 cellar: :any, monterey: "69a5e140d59bf732b928b6af01cb3ac153e4a7f841b47035edae263874abcad2"
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sha256 cellar: :any, big_sur: "ba32a1ab7c5f5d8d0b1c595e072b40cf4d4c744a946f388850834ce5a58304c2"
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sha256 cellar: :any, catalina: "858b9d97f17461ee0ba5111753c8d057d598d088566a247d0a4bb1fe2d3a2cfd"
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sha256 cellar: :any_skip_relocation, x86_64_linux: "1f89845cd5fabec607b9c2c3d648142a85bae3853609c38dc23930e3532b7336"
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end
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depends_on "cmake" => :build
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depends_on "openjdk" => [:build, :test]
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# Reinstate versioning for libhmsbeagle. Remove in the next release
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patch do
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url "https://github.com/beagle-dev/beagle-lib/commit/2af91163d48bed8edfbf64af46d5877305546fd1.patch?full_index=1"
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sha256 "2b16b2441083890bacb85ed082b3a7667a83621564b30a132b7ba8538f7d1d6f"
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end
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def install
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ENV["JAVA_HOME"] = Language::Java.java_home
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system "cmake", "-S", ".", "-B", "build", *std_cmake_args
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system "cmake", "--build", "build"
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system "cmake", "--install", "build"
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end
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test do
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(testpath/"test.cpp").write <<~EOS
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#include "libhmsbeagle/platform.h"
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int main() { return 0; }
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EOS
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(testpath/"T.java").write <<~EOS
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class T {
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static { System.loadLibrary("hmsbeagle-jni"); }
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public static void main(String[] args) {}
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}
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EOS
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system ENV.cxx, "-I#{include}/libhmsbeagle-1",
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testpath/"test.cpp", "-o", "test"
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system "./test"
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system "#{Formula["openjdk"].bin}/javac", "T.java"
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system "#{Formula["openjdk"].bin}/java", "-Djava.library.path=#{lib}", "T"
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end
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end
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