40 lines
1.8 KiB
Ruby
40 lines
1.8 KiB
Ruby
class Vcftools < Formula
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desc "Tools for working with VCF files"
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homepage "https://vcftools.github.io/"
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url "https://github.com/vcftools/vcftools/releases/download/v0.1.16/vcftools-0.1.16.tar.gz"
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sha256 "dbfc774383c106b85043daa2c42568816aa6a7b4e6abc965eeea6c47dde914e3"
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license "LGPL-3.0"
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bottle do
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sha256 cellar: :any_skip_relocation, arm64_big_sur: "02952054dace13adf39f6621591af9c8c33598334dda6c43948fab1e43916239"
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sha256 cellar: :any_skip_relocation, big_sur: "fd610cf54b51ec2ec429edfab36b2cf1b3eb14787ab0ef5ff9d805def8c48cb0"
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sha256 cellar: :any_skip_relocation, catalina: "96424c5e9810127b9f450a88fd314eb94662b35ac88aee4c7efbc8f5420dd989"
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sha256 cellar: :any_skip_relocation, mojave: "5d52f2eafbf96fcffd2b8f9804c2d0ca9752af4242c27ed5fe15a6f8cb935498"
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sha256 cellar: :any_skip_relocation, high_sierra: "2fc4ca7c7c23841a1eed8539910737b5986079be6d22d1ff8375f052266bf478"
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sha256 cellar: :any_skip_relocation, sierra: "32c81874b5d34dee1e36f2dd628cb7eaba8ecef3d612985d7c02c61d6790c5b6"
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sha256 cellar: :any_skip_relocation, el_capitan: "866bc9927660b97ae5bc34dc38db397212163ab289b3284db2d8c610b2aff3d4"
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end
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depends_on "pkg-config" => :build
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depends_on "htslib"
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def install
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system "./configure", "--disable-dependency-tracking",
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"--disable-silent-rules",
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"--prefix=#{prefix}",
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"--with-pmdir=lib/perl5/site_perl"
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system "make", "install"
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bin.env_script_all_files(libexec/"bin", PERL5LIB: lib/"perl5/site_perl")
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end
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test do
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(testpath/"test.vcf").write <<~EOS
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##fileformat=VCFv4.0
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#CHROM POS ID REF ALT QUAL FILTER INFO
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1 1 . A C 10 PASS .
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EOS
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system "#{bin}/vcf-validator", "test.vcf"
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end
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end
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