29 lines
811 B
Ruby
29 lines
811 B
Ruby
require 'formula'
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class Tophat < Formula
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url 'http://tophat.cbcb.umd.edu/downloads/tophat-1.4.1.tar.gz'
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homepage 'http://tophat.cbcb.umd.edu/'
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sha1 '0513bbcadb7194f12fbddeb3e4033e032f2fb29f'
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depends_on 'samtools'
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fails_with :clang do
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build 421
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cause <<-EOS.undent
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Compiling with clang results in the error "default arguments
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cannot be added to a function template that has already been declared".
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Upstream source should move default parameter declaration to fix.
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EOS
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end
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def install
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# It seems this project Makefile doesn't like -j4
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# Disable until consult with upstream
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ENV.deparallelize
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system "./configure", "--disable-debug", "--disable-dependency-tracking",
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"--prefix=#{prefix}"
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system "make install"
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end
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end
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