50 lines
1.7 KiB
Ruby
50 lines
1.7 KiB
Ruby
class RaxmlNg < Formula
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desc "RAxML Next Generation: faster, easier-to-use and more flexible"
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homepage "https://sco.h-its.org/exelixis/web/software/raxml/"
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url "https://github.com/amkozlov/raxml-ng.git",
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tag: "1.0.3",
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revision: "55aeb1c38cfda54cfd9a416b30a87f08b15a94e5"
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license "AGPL-3.0-or-later"
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bottle do
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sha256 cellar: :any, big_sur: "53b34f6c99ec604321d1314e5e6b94c559347c168e1702f0a23f93fc8a75c0e7"
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sha256 cellar: :any, catalina: "365081db70aff0f633a8af24cc85b222b06ae3eb73fbadabd9c8c292e388a6b8"
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sha256 cellar: :any, mojave: "05bfd69c3d218af9a44cbcf2f2d7e007d431aa8e45519a7ead14b67945df3666"
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sha256 cellar: :any_skip_relocation, x86_64_linux: "526f8a8bd9d0d15a7e427f950a86aa37aaa376a29d6a3c15e6781bbb36bdafde"
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end
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depends_on "autoconf" => :build
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depends_on "automake" => :build
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depends_on "cmake" => :build
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depends_on "libtool" => :build
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depends_on "gmp"
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depends_on "open-mpi"
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uses_from_macos "bison" => :build
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uses_from_macos "flex" => :build
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resource "example" do
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url "https://sco.h-its.org/exelixis/resource/download/hands-on/dna.phy"
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sha256 "c2adc42823313831b97af76b3b1503b84573f10d9d0d563be5815cde0effe0c2"
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end
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def install
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args = std_cmake_args + ["-DUSE_GMP=ON"]
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mkdir "build" do
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system "cmake", "..", *args
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system "make", "install"
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end
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mkdir "build_mpi" do
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ENV["CC"] = "mpicc"
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ENV["CXX"] = "mpicxx"
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system "cmake", "..", *args, "-DUSE_MPI=ON", "-DRAXML_BINARY_NAME=raxml-ng-mpi"
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system "make", "install"
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end
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end
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test do
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testpath.install resource("example")
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system "#{bin}/raxml-ng", "--msa", "dna.phy", "--start", "--model", "GTR"
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end
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end
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