41 lines
1.6 KiB
Ruby
41 lines
1.6 KiB
Ruby
class Mrbayes < Formula
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desc "Bayesian inference of phylogenies and evolutionary models"
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homepage "https://nbisweden.github.io/MrBayes/"
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url "https://github.com/NBISweden/MrBayes/archive/v3.2.7a.tar.gz"
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sha256 "3eed2e3b1d9e46f265b6067a502a89732b6f430585d258b886e008e846ecc5c6"
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license "GPL-3.0-or-later"
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head "https://github.com/NBISweden/MrBayes.git", branch: "develop"
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livecheck do
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url :stable
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strategy :github_latest
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end
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bottle do
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sha256 cellar: :any, arm64_big_sur: "aad1abf1a6f090d69ae755d2cfc260d5c2e65574cbf23c5235e78097daa64e17"
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sha256 cellar: :any, big_sur: "e0027c3fc59ebb71bbab154a03976eac6dbae6c97c665355767298d1d03285af"
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sha256 cellar: :any, catalina: "bc54dc6955c86b3d10ddf446cec0c188c3a8db75505efce4d23b66c24a4dd482"
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sha256 cellar: :any, mojave: "2349b14afaa49d436cca2c23e62643fc75b231d2ce1a3e572fb4be90448c5fa7"
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sha256 cellar: :any_skip_relocation, x86_64_linux: "3e8b911053a2c454c03e97e1f8ac89cdce178e30cebf49165dc1b53f1e1a6cbb"
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end
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depends_on "pkg-config" => :build
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depends_on "beagle"
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depends_on "open-mpi"
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def install
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system "./configure", *std_configure_args, "--with-mpi=yes"
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system "make", "install"
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doc.install share/"examples/mrbayes" => "examples"
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end
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test do
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cp doc/"examples/primates.nex", testpath
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cmd = "mcmc ngen = 5000; sump; sumt;"
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cmd = "set usebeagle=yes beagledevice=cpu;" + cmd
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inreplace "primates.nex", "end;", cmd + "\n\nend;"
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system bin/"mb", "primates.nex"
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end
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end
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