66 lines
1.7 KiB
Ruby
66 lines
1.7 KiB
Ruby
class Cromwell < Formula
|
|
desc "Workflow Execution Engine using Workflow Description Language"
|
|
homepage "https://github.com/broadinstitute/cromwell"
|
|
url "https://github.com/broadinstitute/cromwell/releases/download/33/cromwell-33.jar"
|
|
sha256 "57a353abac631f68da40a67a6f8bc2e1553da62caab68bf71a57191fc9b6ae46"
|
|
|
|
head do
|
|
url "https://github.com/broadinstitute/cromwell.git"
|
|
depends_on "sbt" => :build
|
|
end
|
|
|
|
bottle :unneeded
|
|
|
|
depends_on :java => "1.8+"
|
|
depends_on "akka"
|
|
|
|
resource "womtool" do
|
|
url "https://github.com/broadinstitute/cromwell/releases/download/33/womtool-33.jar"
|
|
sha256 "4110116cbd2ce2fa356c5557d70dcf8e492befd45cd5c91f4e9158f702f82a4e"
|
|
end
|
|
|
|
def install
|
|
if build.head?
|
|
system "sbt", "assembly"
|
|
libexec.install Dir["target/scala-*/cromwell-*.jar"][0]
|
|
libexec.install Dir["womtool/target/scala-2.12/womtool-*.jar"][0]
|
|
else
|
|
libexec.install Dir["cromwell-*.jar"][0]
|
|
resource("womtool").stage do
|
|
libexec.install Dir["womtool-*.jar"][0]
|
|
end
|
|
end
|
|
bin.write_jar_script Dir[libexec/"cromwell-*.jar"][0], "cromwell", "$JAVA_OPTS"
|
|
bin.write_jar_script Dir[libexec/"womtool-*.jar"][0], "womtool"
|
|
end
|
|
|
|
test do
|
|
(testpath/"hello.wdl").write <<~EOS
|
|
task hello {
|
|
String name
|
|
|
|
command {
|
|
echo 'hello ${name}!'
|
|
}
|
|
output {
|
|
File response = stdout()
|
|
}
|
|
}
|
|
|
|
workflow test {
|
|
call hello
|
|
}
|
|
EOS
|
|
|
|
(testpath/"hello.json").write <<~EOS
|
|
{
|
|
"test.hello.name": "world"
|
|
}
|
|
EOS
|
|
|
|
result = shell_output("#{bin}/cromwell run --inputs hello.json hello.wdl")
|
|
|
|
assert_match "test.hello.response", result
|
|
end
|
|
end
|