29 lines
970 B
Ruby
29 lines
970 B
Ruby
class Fgbio < Formula
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desc "Tools for working with genomic and high throughput sequencing data"
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homepage "https://fulcrumgenomics.github.io/fgbio/"
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url "https://github.com/fulcrumgenomics/fgbio/releases/download/2.1.0/fgbio-2.1.0.jar"
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sha256 "7a07d86b1263a89375c5796fec51ecc4bf31b3850ec205df8ae8c9ccba7ca314"
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license "MIT"
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bottle do
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sha256 cellar: :any_skip_relocation, all: "7c81e532d95c24a74ec06c7999cc471ee4c4b7386bacc6f2e04f6d49b466de61"
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end
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depends_on "openjdk"
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def install
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libexec.install "fgbio-#{version}.jar"
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bin.write_jar_script libexec/"fgbio-#{version}.jar", "fgbio"
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end
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test do
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(testpath/"test.fasta").write <<~EOS
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>U00096.2:1-70
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AGCTTTTCATTCTGACTGCAACGGGCAATATGTCT
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ctgtgtggattaaaaaaagagtgtctgatagcagc
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EOS
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cmd = "#{bin}/fgbio HardMaskFasta -i test.fasta -o /dev/stdout"
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assert_match "AGCTTTTCATTCTGACTGCAACGGGCAATATGTCTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN", shell_output(cmd)
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end
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end
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