37 lines
1.6 KiB
Ruby
37 lines
1.6 KiB
Ruby
class Vsearch < Formula
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desc "Versatile open-source tool for microbiome analysis"
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homepage "https://github.com/torognes/vsearch"
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url "https://github.com/torognes/vsearch/archive/v2.18.0.tar.gz"
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sha256 "faa585ec2767e15a8ad3c2b78921b789a3b174fe3b0eecb3397b1c795808e982"
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license any_of: ["BSD-2-Clause", "GPL-3.0-or-later"]
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bottle do
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sha256 cellar: :any_skip_relocation, arm64_big_sur: "dc8381c80eec137ec9b59ff781c603d0f70ba2fa97a1cce6f51a0e452e7bdc8f"
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sha256 cellar: :any_skip_relocation, big_sur: "3865c00e1968566ee8b48f860d3412cb3a9137fcab1a970cc3e519a206f63bf9"
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sha256 cellar: :any_skip_relocation, catalina: "3003f6c4460a07260687b855ceb6f048a873afb0ccb9cdee1c5fcbc5d5b82bd5"
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sha256 cellar: :any_skip_relocation, mojave: "622bf6c177ed7493cedb01fd8fb65868405500a20c9772ea957ca0bf59782986"
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sha256 cellar: :any_skip_relocation, x86_64_linux: "180e70bfad482076a2d8f5bb78116421ce6b50cac6d161c4ede84cf447f89bd6"
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end
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depends_on "autoconf" => :build
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depends_on "automake" => :build
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def install
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system "./autogen.sh"
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system "./configure", "--disable-dependency-tracking",
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"--disable-silent-rules",
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"--prefix=#{prefix}"
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system "make"
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system "make", "install"
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end
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test do
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(testpath/"test.fasta").write <<~EOS
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>U00096.2:1-70
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AGCTTTTCATTCTGACTGCAACGGGCAATATGTCTCTGTGTGGATTAAAAAAAGAGTGTCTGATAGCAGC
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EOS
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system bin/"vsearch", "--rereplicate", "test.fasta", "--output", "output.txt"
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assert_predicate testpath/"output.txt", :exist?
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end
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end
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