43 lines
1.7 KiB
Ruby
43 lines
1.7 KiB
Ruby
class Mrbayes < Formula
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desc "Bayesian inference of phylogenies and evolutionary models"
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homepage "https://nbisweden.github.io/MrBayes/"
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url "https://github.com/NBISweden/MrBayes/archive/v3.2.7a.tar.gz"
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sha256 "3eed2e3b1d9e46f265b6067a502a89732b6f430585d258b886e008e846ecc5c6"
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license "GPL-3.0-or-later"
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revision 2
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head "https://github.com/NBISweden/MrBayes.git", branch: "develop"
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livecheck do
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url :stable
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strategy :github_latest
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end
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bottle do
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sha256 cellar: :any, arm64_monterey: "0f10a97438542d44f93ba830bc401fe8bd8d21e92a0ee9b398b9b76791e57ba3"
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sha256 cellar: :any, arm64_big_sur: "09d39ce28dfe9f820b68cc23c70b8e4bf4b795b475c5b5ba9989be7476b780e3"
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sha256 cellar: :any, monterey: "f6ebfc9fd1ccf792b1c385c42e5f8011158fb080f0a4370767f95646fbc6fa6b"
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sha256 cellar: :any, big_sur: "f14702af22530faa81dd6e87fc240b4486408c1f14360fdf9b771c4f20a4e3f0"
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sha256 cellar: :any, catalina: "2c9ad63eaaabbf59329ba205bbe37ef3b2650235931f86a921e08b43a5e9bdb9"
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sha256 cellar: :any_skip_relocation, x86_64_linux: "40751b431b49a864fcbf42fcf80eeb2ebc6cbd535152c226a6565371f8eb661e"
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end
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depends_on "pkg-config" => :build
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depends_on "beagle"
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depends_on "open-mpi"
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def install
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system "./configure", *std_configure_args, "--with-mpi=yes"
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system "make", "install"
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doc.install share/"examples/mrbayes" => "examples"
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end
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test do
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cp doc/"examples/primates.nex", testpath
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cmd = "mcmc ngen = 5000; sump; sumt;"
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cmd = "set usebeagle=yes beagledevice=cpu;" + cmd
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inreplace "primates.nex", "end;", cmd + "\n\nend;"
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system bin/"mb", "primates.nex"
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end
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end
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